| Sequence 1: | NP_001137907.1 | Gene: | CG7504 / 38904 | FlyBaseID: | FBgn0035842 | Length: | 1676 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001116301.1 | Gene: | Upf1 / 19704 | MGIID: | 107995 | Length: | 1124 | Species: | Mus musculus |
| Alignment Length: | 766 | Identity: | 206/766 - (26%) |
|---|---|---|---|
| Similarity: | 324/766 - (42%) | Gaps: | 204/766 - (26%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 993 QDVLMPIPPEFDSFKNYREIFVPLMKLELLSTIERDYKINNKNTFSVSLINVETQD-MCYRLVTR 1056
Fly 1057 VNSKPFGKFVLYTLYCCGMLKETFAN-------LLELKFVSGNVFDLTFEILKQDISEEKLKNIK 1114
Fly 1115 QLTARP------VVDSLRVELGA-LSAVHQLR--------SSPLCRRILKPTQTVNEVS------ 1158
Fly 1159 ----------------LPKQPFTFKGCHKLNEHQENIVLHTYQRIIDDLQPSLTLIQGPPGTGKS 1207
Fly 1208 RVISELCLQTLYGNAAKTLDRKILICAHSNTAVDHIVGLLGSVLRVMNRDQFHLLRFGMHEKMSH 1272
Fly 1273 YSRPFSLEAHFNKAKEQKLQRVSKENAEILKKQ------HNDLK--DEIQQLKEKTNLTSTYLLQ 1329
Fly 1330 QLQQKEKKLQLISNQLSPPLTQREEFEISHMCVTRANIICTTLSSCV-----KLANYVDFFDICI 1389
Fly 1390 VDEATQCTEPWTLLPMRFGLTHMVLVGDMQQLPAVVLSKKAIDFGLSNSMFDRIQRSLQTQLDKP 1454
Fly 1455 GSYHLMHTKLFKLSTQYRMHPEICRWPNQYFYEDQLINAECTA---------RFASPLIP--YCV 1508
Fly 1509 INLKYTCDSNGAQNKSISNNEEARFVAKLLTEMDKHMPSKRFSYGLISPYQNQCYALSQVI---- 1569
Fly 1570 ----PSHMNITPQTVDSYQGLEKDVIIISNART---RGCGFLTNYQRLNVALTRPRRCLVICGNF 1627
Fly 1628 EDLKSVEMWRNLLDDARKRKVYFNLDRDDVNDLDRSLIK----KMMVNTIN 1674 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| CG7504 | NP_001137907.1 | FHA | 4..96 | CDD:238017 | |
| FHA | <10..101 | CDD:224630 | |||
| AAA_11 | 1171..1428 | CDD:289831 | 71/269 (26%) | ||
| AAA_19 | 1194..1251 | CDD:289986 | 21/56 (38%) | ||
| YtxH | <1293..1347 | CDD:295162 | 11/61 (18%) | ||
| AAA_12 | 1435..1626 | CDD:289832 | 65/212 (31%) | ||
| Upf1 | NP_001116301.1 | Sufficient for interaction with RENT2. /evidence=ECO:0000250 | 1..410 | 36/154 (23%) | |
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 39..69 | ||||
| DNA2 | 140..915 | CDD:224037 | 200/749 (27%) | ||
| DEXXQc_UPF1 | 476..709 | CDD:350797 | 82/313 (26%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1004..1053 | ||||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1066..1091 | ||||
| [ST]-Q motif 1 | 1084..1085 | ||||
| [ST]-Q motif 2 | 1102..1103 | ||||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1105..1124 | ||||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG1112 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D62494at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000219 | |
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 5 | 4.820 | |||||