DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp3 and Actl6b

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_006504698.1 Gene:Actl6b / 83766 MGIID:1933548 Length:434 Species:Mus musculus


Alignment Length:455 Identity:116/455 - (25%)
Similarity:196/455 - (43%) Gaps:99/455 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVG-----------------DTNTRRITKG 54
            |.|.|:|:...:.|:||...|:...|:.:.:..:...|                 |||...:.: 
Mouse    13 ALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPR- 76

  Fly    55 IEDLDFFIGDEAFDATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNT 119
                           .|..:..|:::|::|||:.....|:....|::::||..|..|::|.|.||
Mouse    77 ---------------DGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNT 126

  Fly   120 PENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGY 184
            ...||...|:|||.:|:|..::...|||...|:..|        ||:|:|||...|..|||.:||
Mouse   127 RAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRS--------TGLVLDSGATHTTAIPVHDGY 183

  Fly   185 VIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAI----------KEK--------H 231
            |:...|...|:||..|:...:.|.:|..:.|.|...:...:.:          |||        |
Mouse   184 VLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMIAAKEPVREGAPPNWKKKEKLPQVSKSWH 248

  Fly   232 CYICPDIAKEF---------AKYDTEPGKWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEF 287
            .|:|.::.::|         :.||.:..   .....|:......:|.|.|.||...||..|.|  
Mouse   249 NYMCNEVIQDFQASVLQVSDSPYDEQVA---AQMPTVHYEMPNGYNTDYGAERLRIPEGLFDP-- 308

  Fly   288 SN-----PDFTIPLSEIVDNVIQNCPIDVR--------RPLYNNIVLSGGSTMFKDFGRRLQRDI 339
            ||     .:..:.:..:|...|..|.||:|        :.||.:::::||:|:.:.|..||.|::
Mouse   309 SNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPVDASPCSQGLYGSVIVTGGNTLLQGFTDRLNREL 373

  Fly   340 KRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAYEEYG 404
            .:.....:|:....|...::             ::::.|.|||:|||...|.|:..:|..|||.|
Mouse   374 SQKTPPSMRLKLIASNSTME-------------RKFSPWIGGSILASLGTFQQMWISKQEYEEGG 425

  Fly   405  404
            Mouse   426  425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 116/455 (25%)
Actl6bXP_006504698.1 Actin 11..434 CDD:306521 116/455 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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