DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp3 and ACT4

DIOPT Version :10

Sequence 1:NP_523968.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_200745.1 Gene:ACT4 / 836056 AraportID:AT5G59370 Length:377 Species:Arabidopsis thaliana


Alignment Length:412 Identity:155/412 - (37%)
Similarity:212/412 - (51%) Gaps:51/412 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATG-Y 72
            |.|.|||..|.||||:..|:.:.||.        ||......:..|:...|.::||||....| .
plant    11 VCDNGTGMVKAGFAGDDAPRAVFPSI--------VGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL 67

  Fly    73 SIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVP 137
            ::|||:.||:|.:||.||:......:..||..||:|..||||.|||...|||...:|||||||.|
plant    68 TLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132

  Fly   138 GLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITS 202
            .:|:|:||||:|.||       .|| ||||:||||||:|.:|:.|||.:...|..:.:|||::|.
plant   133 AMYVAIQAVLSLYAS-------GRT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189

  Fly   203 FIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPGKWIRNFSGVNTVTKAPF 267
            .:..:|.||..........|..:.:|||..||..|..:|.....|.        |.|....:.|.
plant   190 HLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTS--------SSVEKSFELPD 246

  Fly   268 N--VDVGYERFLGPEIFFHPE---FSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGSTM 327
            .  :.:|.|||..||:.|.|.   ..||.    :.|...|.|..|.:|:|:.||.|||||||:||
plant   247 GQVITIGAERFRCPEVLFQPSMIGMENPG----IHETTYNSIMKCDVDIRKDLYGNIVLSGGTTM 307

  Fly   328 FKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQ 392
            |...|.|:.::|.                .:.|..:.::|:....::|:||.|||:|||...|.|
plant   308 FGGIGDRMSKEIT----------------ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 356

  Fly   393 VCHTKAAYEEYGPSICRHNPVF 414
            :...||.|:|.||||. |...|
plant   357 MWIAKAEYDESGPSIV-HRKCF 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_523968.1 ASKHA_NBD_Arp3-like 7..410 CDD:466822 153/406 (38%)
ACT4NP_200745.1 ASKHA_NBD_actin 8..372 CDD:466823 152/404 (38%)

Return to query results.
Submit another query.