DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp3 and Actrt2

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_082789.1 Gene:Actrt2 / 73353 MGIID:1920603 Length:377 Species:Mus musculus


Alignment Length:411 Identity:129/411 - (31%)
Similarity:207/411 - (50%) Gaps:58/411 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEA-FDA 69
            |:.:.|.|:|..|.|.:|...|:.:..|.        ||....:....|.....:|:|:|| :..
Mouse    10 PSVIFDNGSGLCKAGLSGEIGPRHVTSSV--------VGYPKFKAPPTGASQKKYFVGEEALYKQ 66

  Fly    70 TGYSIKYPVRHGLVEDWDLMERFLEQCVFKY-LRAEPEDHYFLLTEPPLNTPENREYTAEIMFET 133
            ...|:.||:..|||..||.:|: |.:.:|:: |..:|.:...|:|||.||..||||.|||:||||
Mouse    67 EALSLHYPIDRGLVTSWDDVEK-LWRHLFEWELGVKPCERPVLVTEPSLNPRENREKTAEMMFET 130

  Fly   134 FNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGR 198
            |.||..|::.||||||.:|        ..:||:|||||||||..:|:.|||.:...:..:.:||:
Mouse   131 FEVPAFYLSDQAVLALYSS--------ACVTGLVVDSGDGVTCTVPIYEGYSLPHAVSKLYVAGK 187

  Fly   199 NITSFIQSLL--REREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPGKWIRNFSGVNT 261
            :||..:..||  ..|....|.|::|  |..||||.||:..:..:|.:          |....|..
Mouse   188 DITELLTRLLLASGRAFPCPLEKAL--ADDIKEKLCYVALEPEEELS----------RRAEDVLR 240

  Fly   262 VTKAPFN--VDVGYERFLGPEIFFHPE---FSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVL 321
            ..|.|..  :.:|.:.:..||:.|.|:   ...|.    |:::..|.|..|..|:::.|:..|||
Mouse   241 EYKLPDGNVIYIGDQLYQAPEVLFSPDQLGTHGPG----LAQMASNSITKCDADIQKTLFGEIVL 301

  Fly   322 SGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLAS 386
            |||||:|:....||.::::                ::..|.:.:::.....:.::.|.|.|::.|
Mouse   302 SGGSTLFQGLDDRLLKELE----------------QLASKGVPIKITAPPDRWFSTWIGASIVTS 350

  Fly   387 TPEFYQVCHTKAAYEEYGPSI 407
            ...|.|:..|.|.::|:|.|:
Mouse   351 LSSFKQMWITAADFKEFGVSV 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 129/411 (31%)
Actrt2NP_082789.1 NBD_sugar-kinase_HSP70_actin 6..377 CDD:302596 129/411 (31%)
ACTIN 10..377 CDD:214592 129/411 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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