DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp3 and actr2b

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_021336257.1 Gene:actr2b / 554861 ZFINID:ZDB-GENE-050410-4 Length:399 Species:Danio rerio


Alignment Length:417 Identity:139/417 - (33%)
Similarity:210/417 - (50%) Gaps:60/417 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VIDVGTGYSKLGFAGNKEPQFIIPSAIA---IKESARVGDTNTRRITKGIEDLDFFIGDEAFDAT 70
            |.|.|||:.|.|:||:..|:.|.|:.:.   |:.:|:||:...:...|    :|..:||||.:..
Zfish    10 VCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKNNKK----MDLMVGDEASELR 70

  Fly    71 G-YSIKYPVRHGLVEDWDLMERFLEQCVF--KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 132
            . ..:.||:.:|:|.:||.| :.|....|  :.|.....|...||||||:|..:|||...|:|||
Zfish    71 SMLEVNYPMENGIVRNWDDM-KHLWDYTFGPEKLNINSRDCKILLTEPPMNPTKNREKIIEVMFE 134

  Fly   133 TFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAG 197
            |:...|:|||:||||.|.|        :..|||:||||||||||:.||.||:.:....:.:.|||
Zfish   135 TYQFTGVYIAIQAVLTLYA--------QGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAG 191

  Fly   198 RNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKE----------FAKYDTEPGKW 252
            |:||.::..||..|..........||.:.:||..||:..:|.:|          ...|....|:.
Zfish   192 RDITRYLIKLLLLRGYAFNHSADFETVRMMKENLCYVGYNIEQEQKLALETTVLVESYTLPDGRV 256

  Fly   253 IRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYN 317
            |:                ||.|||..||..|.|...|.: .:.::|::.|.||...||.|...|.
Zfish   257 IK----------------VGGERFEAPEALFQPHLINVE-GVGVAELLFNTIQAADIDTRAEFYK 304

  Fly   318 NIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRI-KPKPIDVQVITHHMQRYAVWFGG 381
            :|||||||||:.....||:|::|:      ...|.:.:|.: |.....:::.....:::.|:.||
Zfish   305 HIVLSGGSTMYPGLPSRLERELKQ------LYLERVLKGDVDKLSKFKIRIEDPPRRKHMVFLGG 363

  Fly   382 SMLA----STPEFYQVCHTKAAYEEYG 404
            ::||    ....|:.   |:..|:|.|
Zfish   364 AVLADIMKDKDNFWL---TREEYQEKG 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 139/417 (33%)
actr2bXP_021336257.1 ACTIN 6..393 CDD:214592 139/417 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.