DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp3 and Actl11

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001019959.2 Gene:Actl11 / 316000 RGDID:1310036 Length:1218 Species:Rattus norvegicus


Alignment Length:409 Identity:108/409 - (26%)
Similarity:177/409 - (43%) Gaps:73/409 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RLPACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFD 68
            ::.|.|||.|||::|.|.|.......::||.:.:.:....|...             ::..|..:
  Rat   868 KMAAIVIDTGTGFTKCGLAQENHVLSVVPSQVQMLQHPPQGQPQ-------------YVVPEHQE 919

  Fly    69 ATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFET 133
            .: ||:   :..|:|.|||.:|...:...:..||.:||:...|:.:.|::...|||..|||:||.
  Rat   920 GS-YSV---LNRGVVSDWDALEVLWQHLFYCKLRVQPEEMAVLVADSPISPRTNREKVAEILFER 980

  Fly   134 FNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGR 198
            |:||.:....||:|.|       .|..|| ||:||.||.|.::|.|:..|.:.......:.:||.
  Rat   981 FHVPAMQTVHQALLTL-------YAYGRT-TGLVVGSGHGTSYVAPIITGDLAPLDTYRLDVAGA 1037

  Fly   199 NITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTE-------PGKWIRNF 256
            ::|.::..||...... ||:..:  .:.|||..||:..|...|.|:..::       |.|.:   
  Rat  1038 DLTDYLAQLLMSGGHS-PPKGGI--VRQIKEACCYVAMDTTTEMARNQSQVQVDFVLPDKHV--- 1096

  Fly   257 SGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVL 321
                        :.:|.|||..||..|.|.....: .:.|.::....|....:..:..|..|:||
  Rat  1097 ------------ITLGSERFCCPEALFQPNLLGLN-QLGLPQLALLSISRLEVKQQEQLLANVVL 1148

  Fly   322 SGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLAS 386
            .||||:...|..|::::              |..|        ..|:....:..|.|.|||::|.
  Rat  1149 EGGSTLINGFPERMRQE--------------LGPG--------ATVLGSPHRAVAAWLGGSIMAC 1191

  Fly   387 TPEFYQVCHTKAAYEEYGP 405
            ...|..:..::..|||.||
  Rat  1192 RDSFQSLWLSRREYEEEGP 1210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 108/409 (26%)
Actl11NP_001019959.2 PHA03247 <200..485 CDD:223021
NBD_sugar-kinase_HSP70_actin 871..1215 CDD:418402 108/406 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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