DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp3 and Actc1

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_062056.1 Gene:Actc1 / 29275 RGDID:2026 Length:377 Species:Rattus norvegicus


Alignment Length:419 Identity:154/419 - (36%)
Similarity:215/419 - (51%) Gaps:61/419 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ACVIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATG 71
            |.|.|.|:|..|.||||:..|:.:.||.        ||....:.:..|:...|.::||||....|
  Rat     9 ALVCDNGSGLVKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEAQSKRG 65

  Fly    72 -YSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFN 135
             .::|||:.||::.:||.||:......:..||..||:|..||||.|||...|||...:|||||||
  Rat    66 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN 130

  Fly   136 VPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNI 200
            ||.:|:|:||||:|.||       .|| ||||:||||||||.:|:.|||.:...|..:.:|||::
  Rat   131 VPAMYVAIQAVLSLYAS-------GRT-TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDL 187

  Fly   201 TSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFA----------KYDTEPGKWIRN 255
            |.::..:|.||..........|..:.||||.||:..|...|.|          .|:...|:.|  
  Rat   188 TDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVI-- 250

  Fly   256 FSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIV 320
                          .:|.|||..||..|.|.|...: :..:.|...|.|..|.||:|:.||.|.|
  Rat   251 --------------TIGNERFRCPETLFQPSFIGME-SAGIHETTYNSIMKCDIDIRKDLYANNV 300

  Fly   321 LSGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLA 385
            ||||:||:.....|:|::|.                .:.|..:.:::|....::|:||.|||:||
  Rat   301 LSGGTTMYPGIADRMQKEIT----------------ALAPSTMKIKIIAPPERKYSVWIGGSILA 349

  Fly   386 STPEFYQVCHTKAAYEEYGPSICRHNPVF 414
            |...|.|:..:|..|:|.||||. |...|
  Rat   350 SLSTFQQMWISKQEYDEAGPSIV-HRKCF 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 154/419 (37%)
Actc1NP_062056.1 PTZ00281 4..377 CDD:173506 153/417 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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