DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp3 and arx-2

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_505657.1 Gene:arx-2 / 179440 WormBaseID:WBGene00000200 Length:395 Species:Caenorhabditis elegans


Alignment Length:421 Identity:139/421 - (33%)
Similarity:208/421 - (49%) Gaps:64/421 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VIDVGTGYSKLGFAGNKEPQFIIPSAIA---IKESARVGDTNTRRITKGIEDLDFFIGDEAFDAT 70
            |:|.|||:.|.|:||...|..|.||.:.   ::.:.|||:         ||..|..:|:|.....
 Worm    10 VVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGN---------IEIKDLMVGEECSQLR 65

  Fly    71 G-YSIKYPVRHGLVEDWDLMERFLEQCVF--KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 132
            . ..|.||:.:|:|.:||.|....:. .|  :.|..:|::...||||||||...|||...::|||
 Worm    66 QMLDINYPMDNGIVRNWDDMAHVWDH-TFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFE 129

  Fly   133 TFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAG 197
            .:....:|:||||||.|.|        :..|||:||||||||||:.||.||:.:....:.:.|||
 Worm   130 QYGFNSIYVAVQAVLTLYA--------QGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAG 186

  Fly   198 RNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKE----------FAKYDTEPGKW 252
            |:||.::..||.:|..........||.:.:|||.|||..|:.:|          ..:|....|:.
 Worm   187 RDITKYLIKLLLQRGYNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRV 251

  Fly   253 IRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYN 317
            ||                :|.|||..|||.|.|...|.: ...|||::...||...||.|...|.
 Worm   252 IR----------------LGGERFEAPEILFQPHLINVE-KAGLSELLFGCIQASDIDTRLDFYK 299

  Fly   318 NIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGS 382
            :||||||:||:.....||::::|     :|.:...|.......:...:::.....:::.|:.||:
 Worm   300 HIVLSGGTTMYPGLPSRLEKELK-----QLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGA 359

  Fly   383 MLAS-----TPEFYQVCHTKAAYEEYGPSIC 408
            :||:     ..:|:.   :|..|||.|.:.|
 Worm   360 VLANLMKDRDQDFWV---SKKEYEEGGIARC 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 139/421 (33%)
arx-2NP_505657.1 NBD_sugar-kinase_HSP70_actin 1..383 CDD:302596 137/415 (33%)
ACTIN 6..392 CDD:214592 139/421 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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