DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp3 and actr1a

DIOPT Version :9

Sequence 1:NP_001261559.1 Gene:Arp3 / 38898 FlyBaseID:FBgn0262716 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001163973.1 Gene:actr1a / 100101796 XenbaseID:XB-GENE-491902 Length:376 Species:Xenopus tropicalis


Alignment Length:404 Identity:148/404 - (36%)
Similarity:217/404 - (53%) Gaps:57/404 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VIDVGTGYSKLGFAGNKEPQFIIPSAIAIKESARVGDTNTRRITKGIEDLDFFIGDEAFDATG-Y 72
            |||.|:|..|.||||::.|::..|:        .||.....|:..|..:.|.|||.:|.:..| .
 Frog    13 VIDNGSGVIKAGFAGDQIPKYCFPN--------YVGRPKHIRVMAGALEGDLFIGPKAEEHRGLL 69

  Fly    73 SIKYPVRHGLVEDWDLMERFLEQCVFK-YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNV 136
            ||:||:.||:|:||:.|||..:....| .|:...|:|..||||.|||..:|||..||:.||||||
 Frog    70 SIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFETFNV 134

  Fly   137 PGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNIT 201
            |.|:|::||||:|.|:       .|| ||:|:||||||||.:|:.||:.:...|..|.||||:::
 Frog   135 PALFISMQAVLSLYAT-------GRT-TGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVS 191

  Fly   202 SFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAK------EFAKYDTEPGKWIRNFSGVN 260
            .|::..||:...........|..|.|||:.||:..:..|      |.|:|....|.         
 Frog   192 RFLRLYLRKEGYDFHTSAEFEIVKTIKERACYLSINPQKDETLETEKAQYYLPDGS--------- 247

  Fly   261 TVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGS 325
                   .:::|..||..||:.|.|:....:.. .:.|::...||...:|:||.|::||||||||
 Frog   248 -------TIEIGPARFRAPELLFRPDLIGEECE-GIHEVLVFAIQKSDMDLRRTLFSNIVLSGGS 304

  Fly   326 TMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEF 390
            |:||.||.||..::|                ::.||.:.:::.....:.|:.|.|||:|||...|
 Frog   305 TLFKGFGDRLLSEVK----------------KLAPKDVKIRISAPQERLYSTWIGGSILASLDTF 353

  Fly   391 YQVCHTKAAYEEYG 404
            .::..:|..|||.|
 Frog   354 KKMWVSKKEYEEDG 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp3NP_001261559.1 PTZ00280 2..417 CDD:240343 148/404 (37%)
actr1aNP_001163973.1 NBD_sugar-kinase_HSP70_actin 5..376 CDD:388382 148/404 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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