DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sarm and sarm1

DIOPT Version :10

Sequence 1:NP_001246662.1 Gene:Sarm / 38895 FlyBaseID:FBgn0262579 Length:1730 Species:Drosophila melanogaster
Sequence 2:XP_002937189.2 Gene:sarm1 / 779619 XenbaseID:XB-GENE-6033913 Length:719 Species:Xenopus tropicalis


Alignment Length:633 Identity:297/633 - (46%)
Similarity:414/633 - (65%) Gaps:17/633 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   718 LEKINEVIRRAWAVPTHGHELGYSLCNSLRQSGGLDLLMK--NCVKPDLQFSSAQLLEQCLTTEN 780
            :.:|.:::..||.:|..|.|:...||.:||..|.||.|:.  ...:..:::.:.|||||.|..:|
 Frog    87 IAEIFQMVEEAWVMPAVGREVAQGLCETLRLEGALDRLLSLLQSSEASVKYQACQLLEQVLVADN 151

  Fly   781 RKHVVDNGLDKVVNVACVCTKN-SNMEHSRVGTGILEHLFKHSEGTCSDVIRLGGLDAVLFECRT 844
            |..:...||..|:|:    ||. .:...:|...|||||:|||||.|||.::..|||:.:||.||.
 Frog   152 RDRIARIGLGVVLNL----TKELGDPRLARSLCGILEHMFKHSEETCSQLVCNGGLEYILFWCRW 212

  Fly   845 SDLETLRHCASALANLSLYGGAENQEEMILRKVPMWLFPLAF-HNDDNIKYYACLAIAVLVANKE 908
            :|...|||||.||||.::|||..||..||.::...||||||| ..||.|:::|||||.||..|||
 Frog   213 TDPVVLRHCAVALANCAMYGGPCNQHLMIDKRAAEWLFPLAFSKEDDLIRFHACLAITVLATNKE 277

  Fly   909 IEAEVLKSGCLDLVEPFVTSHDPSAFARSNL---AHAHGQSKHWLKRLVPVLSSNREEARNLAAF 970
            ||.:|.:||.|.|||||::|.||..||||.|   .:..|::...|:||||:|.|:|.||:.:|||
 Frog   278 IEKDVERSGTLALVEPFISSLDPKEFARSLLDSSDNTQGRTGDDLQRLVPLLDSSRLEAQCIAAF 342

  Fly   971 HFCMEAGIKREQGNTDIFREINAIEALKN-VASCPNAIASKFAAQALRLIGETVPHKLSQQVPLW 1034
            :.|:|..||.:|.|..:|.||.|.::|:. |..|.:...|..|.:||:::||.||.::::.||.|
 Frog   343 YLCVEVAIKCQQKNIKLFNEIGATQSLRRIVCYCADGTVSSLAKRALQMMGE
EVPRRIARSVPNW 407

  Fly  1035 SVEDVQEWVKQIGFNDYIDKFNESQVDGDLLLKLNQDNLRADIGIGNGILLKRFERELQNLKRMA 1099
            ...:||.|::||||::|.:.|.|:|:||||||:|....||.|:.:.:.|..|||.|||..||..|
 Frog   408 KPLEVQHWLQQIGFSNYSENFLENQIDGDLLLRLTMSELRDDLNMTSSITRKRFMRELVELKTFA 472

  Fly  1100 DYSSKDTAKMHQFLSEIGTDYCTYTYAMLNAGIDKCALPHVNEDMLMTECGIHNSIHRLRILNAV 1164
            :||:.|.:.:..:|..:...:..|||.::.||||:..|.||.|..|..:|.|....||:.||:|.
 Frog   473 NYSTCDRSNLADWLGSVDPRFRQYTYNLVTAGIDRNFLHHVTEQQLEEDCHISIGFHRVCILSAA 537

  Fly  1165 KN-LENSLPSSSEENMAKTLDVFVSYRRSNGSQLASLLKVHLQLRGFSVFIDVERLEAGKFDNGL 1228
            :. |.:.||.|..::.|...|||:|||||.||||||||||||.||||:.|||||:||||||::.|
 Frog   538 REMLHSPLPCSVGKSSADGPDVFISYRRSTGSQLASLLKVHLYLRGFTAFIDVEKLEAGKFEDKL 602

  Fly  1229 LNSIRQAKNFVLVLTPDALHRCINDEDCKDWVHREIVAALNSNCNIIPIIDQQFDWPEVERLPED 1293
            |:|:..|:||||:|:..||.:|:.|.|||||||:|||.|||::.||||:.| .|:||:...||||
 Frog   603 LHSVISARNFVLILSAKALDKCMGDNDCKDWVHKEIVTALNNSKNIIPVTD-HFEWPDPMTLPED 666

  Fly  1294 MRSVAHFNGVNWIHDYQDACIDKLERFLRGEKNIDRIAA---MVPGTP 1338
            ||:|..|||:.|.|:||||.::|:.|||:|..:.|..|.   .:.|||
 Frog   667 MRAVLKFNGIKWSHEYQDATVEKIIRFLQGRSSRDSSAGSEISLDGTP 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SarmNP_001246662.1 SARM1_N 716..1021 CDD:467946 136/310 (44%)
SAM_SARM1-like_repeat1 1031..1099 CDD:188900 33/67 (49%)
SAM_SARM1-like_repeat2 1100..1169 CDD:188901 24/69 (35%)
TIR 1184..1321 CDD:214587 87/136 (64%)
sarm1XP_002937189.2 SARM1_N 83..394 CDD:467946 136/310 (44%)
SAM_SARM1-like_repeat1 404..472 CDD:188900 33/67 (49%)
SAM_SARM1-like_repeat2 473..542 CDD:188901 23/68 (34%)
TIR 557..697 CDD:214587 89/140 (64%)

Return to query results.
Submit another query.