DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sarm and sarm1

DIOPT Version :9

Sequence 1:NP_001246662.1 Gene:Sarm / 38895 FlyBaseID:FBgn0262579 Length:1730 Species:Drosophila melanogaster
Sequence 2:XP_002937189.2 Gene:sarm1 / 779619 XenbaseID:XB-GENE-6033913 Length:719 Species:Xenopus tropicalis


Alignment Length:633 Identity:297/633 - (46%)
Similarity:414/633 - (65%) Gaps:17/633 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   718 LEKINEVIRRAWAVPTHGHELGYSLCNSLRQSGGLDLLMK--NCVKPDLQFSSAQLLEQCLTTEN 780
            :.:|.:::..||.:|..|.|:...||.:||..|.||.|:.  ...:..:::.:.|||||.|..:|
 Frog    87 IAEIFQMVEEAWVMPAVGREVAQGLCETLRLEGALDRLLSLLQSSEASVKYQACQLLEQVLVADN 151

  Fly   781 RKHVVDNGLDKVVNVACVCTKN-SNMEHSRVGTGILEHLFKHSEGTCSDVIRLGGLDAVLFECRT 844
            |..:...||..|:|:    ||. .:...:|...|||||:|||||.|||.::..|||:.:||.||.
 Frog   152 RDRIARIGLGVVLNL----TKELGDPRLARSLCGILEHMFKHSEETCSQLVCNGGLEYILFWCRW 212

  Fly   845 SDLETLRHCASALANLSLYGGAENQEEMILRKVPMWLFPLAF-HNDDNIKYYACLAIAVLVANKE 908
            :|...|||||.||||.::|||..||..||.::...||||||| ..||.|:::|||||.||..|||
 Frog   213 TDPVVLRHCAVALANCAMYGGPCNQHLMIDKRAAEWLFPLAFSKEDDLIRFHACLAITVLATNKE 277

  Fly   909 IEAEVLKSGCLDLVEPFVTSHDPSAFARSNL---AHAHGQSKHWLKRLVPVLSSNREEARNLAAF 970
            ||.:|.:||.|.|||||::|.||..||||.|   .:..|::...|:||||:|.|:|.||:.:|||
 Frog   278 IEKDVERSGTLALVEPFISSLDPKEFARSLLDSSDNTQGRTGDDLQRLVPLLDSSRLEAQCIAAF 342

  Fly   971 HFCMEAGIKREQGNTDIFREINAIEALKN-VASCPNAIASKFAAQALRLIGETVPHKLSQQVPLW 1034
            :.|:|..||.:|.|..:|.||.|.::|:. |..|.:...|..|.:||:::||.||.::::.||.|
 Frog   343 YLCVEVAIKCQQKNIKLFNEIGATQSLRRIVCYCADGTVSSLAKRALQMMGEEVPRRIARSVPNW 407

  Fly  1035 SVEDVQEWVKQIGFNDYIDKFNESQVDGDLLLKLNQDNLRADIGIGNGILLKRFERELQNLKRMA 1099
            ...:||.|::||||::|.:.|.|:|:||||||:|....||.|:.:.:.|..|||.|||..||..|
 Frog   408 KPLEVQHWLQQIGFSNYSENFLENQIDGDLLLRLTMSELRDDLNMTSSITRKRFMRELVELKTFA 472

  Fly  1100 DYSSKDTAKMHQFLSEIGTDYCTYTYAMLNAGIDKCALPHVNEDMLMTECGIHNSIHRLRILNAV 1164
            :||:.|.:.:..:|..:...:..|||.::.||||:..|.||.|..|..:|.|....||:.||:|.
 Frog   473 NYSTCDRSNLADWLGSVDPRFRQYTYNLVTAGIDRNFLHHVTEQQLEEDCHISIGFHRVCILSAA 537

  Fly  1165 KN-LENSLPSSSEENMAKTLDVFVSYRRSNGSQLASLLKVHLQLRGFSVFIDVERLEAGKFDNGL 1228
            :. |.:.||.|..::.|...|||:|||||.||||||||||||.||||:.|||||:||||||::.|
 Frog   538 REMLHSPLPCSVGKSSADGPDVFISYRRSTGSQLASLLKVHLYLRGFTAFIDVEKLEAGKFEDKL 602

  Fly  1229 LNSIRQAKNFVLVLTPDALHRCINDEDCKDWVHREIVAALNSNCNIIPIIDQQFDWPEVERLPED 1293
            |:|:..|:||||:|:..||.:|:.|.|||||||:|||.|||::.||||:.| .|:||:...||||
 Frog   603 LHSVISARNFVLILSAKALDKCMGDNDCKDWVHKEIVTALNNSKNIIPVTD-HFEWPDPMTLPED 666

  Fly  1294 MRSVAHFNGVNWIHDYQDACIDKLERFLRGEKNIDRIAA---MVPGTP 1338
            ||:|..|||:.|.|:||||.::|:.|||:|..:.|..|.   .:.|||
 Frog   667 MRAVLKFNGIKWSHEYQDATVEKIIRFLQGRSSRDSSAGSEISLDGTP 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SarmNP_001246662.1 SAM_SARM1-like_repeat1 1031..1099 CDD:188900 33/67 (49%)
SAM 1031..1096 CDD:197735 31/64 (48%)
SAM_SARM1-like_repeat2 1100..1169 CDD:188901 24/69 (35%)
SAM 1111..1170 CDD:197735 21/59 (36%)
TIR_2 1185..1285 CDD:290400 66/99 (67%)
sarm1XP_002937189.2 SAM_SARM1-like_repeat1 404..472 CDD:188900 33/67 (49%)
SAM_SARM1-like_repeat2 473..542 CDD:188901 23/68 (34%)
TIR 557..697 CDD:214587 89/140 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 159 1.000 Domainoid score I4051
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9015
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D113262at33208
OrthoFinder 1 1.000 - - FOG0007036
OrthoInspector 1 1.000 - - oto102586
Panther 1 1.100 - - LDO PTHR22998
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5128
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.020

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