DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sarm and Sarm1

DIOPT Version :9

Sequence 1:NP_001246662.1 Gene:Sarm / 38895 FlyBaseID:FBgn0262579 Length:1730 Species:Drosophila melanogaster
Sequence 2:NP_001099287.1 Gene:Sarm1 / 287545 RGDID:1310078 Length:724 Species:Rattus norvegicus


Alignment Length:682 Identity:300/682 - (43%)
Similarity:428/682 - (62%) Gaps:18/682 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 GSGQQEIEQTINKYSNMLTSIVSSLQEDERGGSAITVHDVGGKKSQYLEKINEVIRRAWAVPTHG 735
            |.|.:|:...:.  :.:..::..||.|.::..|.:............|.::.:::..||.:|..|
  Rat    47 GRGSREVSPGVG--TEVQGALERSLPELQQALSELKQASAAQAVGAGLAEVFQLVEEAWLLPAVG 109

  Fly   736 HELGYSLCNSLRQSGGLDLLMKNCVKPDLQ--FSSAQLLEQCLTTENRKHVVDNGLDKVVNVACV 798
            .|:...||:::|..||||||::....|:|:  ..:|:||||.|..|||..|...||..::|::  
  Rat   110 REVAQGLCDAIRLDGGLDLLLRLLQAPELETRVQAARLLEQILVAENRDRVARIGLGVILNLS-- 172

  Fly   799 CTKNSNMEHSRVGTGILEHLFKHSEGTCSDVIRLGGLDAVLFECRTSDLETLRHCASALANLSLY 863
             .:...:|.:|...|||||:|||||.||..::..|||||||:.||.:|...|||||.||||.:|:
  Rat   173 -KEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALANCALH 236

  Fly   864 GGAENQEEMILRKVPMWLFPLAFHNDDN-IKYYACLAIAVLVANKEIEAEVLKSGCLDLVEPFVT 927
            ||...|..|:.::...|||||||..:|. ::.:||||:|||..|||:|.||..||.|.||||.|.
  Rat   237 GGQTVQRCMVEKRAAEWLFPLAFSKEDELLRLHACLAVAVLATNKEVEREVEHSGTLALVEPLVA 301

  Fly   928 SHDPSAFAR-----SNLAHAHGQSKHWLKRLVPVLSSNREEARNLAAFHFCMEAGIKREQGNTDI 987
            |.||..|||     |:.:...|...  |:.||.:|.|:|.||:.:.||:.|.||.||..||.|.:
  Rat   302 SLDPGRFARCLVDASDTSQGRGPDD--LQSLVLLLDSSRLEAQCIGAFYLCAEAAIKSLQGKTKV 364

  Fly   988 FREINAIEALKNVAS-CPNAIASKFAAQALRLIGETVPHKLSQQVPLWSVEDVQEWVKQIGFNDY 1051
            |.:|.||::||.:.| ..|...|..|.:||||:||.||.::...|..|...:||.|::||||:.|
  Rat   365 FSDIGAIQSLKRLVSYSTNGTTSTLAKRALRLLGEEVPRRILPCVASWKEAEVQTWLQQIGFSQY 429

  Fly  1052 IDKFNESQVDGDLLLKLNQDNLRADIGIGNGILLKRFERELQNLKRMADYSSKDTAKMHQFLSEI 1116
            .:.|.:.||||||||:|..:.|:.|:|:.:.|..|||.|||..||..|.|::.|.:.:..:|..:
  Rat   430 CENFRDQQVDGDLLLRLTDEELQTDLGMKSSITRKRFFRELTELKTFASYATCDRSNLADWLGSL 494

  Fly  1117 GTDYCTYTYAMLNAGIDKCALPHVNEDMLMTECGIHNSIHRLRILNAVKN-LENSLPSSSEENMA 1180
            ...:..|||.:::.|:|:..|..|:|..|:.:|||...:||.|||:|.:. |.:.||.:..:...
  Rat   495 DPRFRQYTYGLVSCGLDRSLLHRVSEQQLLEDCGIRLGVHRTRILSAAREMLHSPLPCTGGKPSG 559

  Fly  1181 KTLDVFVSYRRSNGSQLASLLKVHLQLRGFSVFIDVERLEAGKFDNGLLNSIRQAKNFVLVLTPD 1245
            .|.|||:||||::||||||||||||||.|||||||||:||||||::.|:.|:..|:||||||:..
  Rat   560 DTPDVFISYRRNSGSQLASLLKVHLQLHGFSVFIDVEKLEAGKFEDKLIQSVMAARNFVLVLSAG 624

  Fly  1246 ALHRCINDEDCKDWVHREIVAALNSNCNIIPIIDQQFDWPEVERLPEDMRSVAHFNGVNWIHDYQ 1310
            ||.:|:.|.:||||||:|||.||:.:.||:|||| .|:|||.:.|||||::|..|||:.|.|:||
  Rat   625 ALDKCMQDHECKDWVHKEIVTALSCSKNIVPIID-GFEWPEPQALPEDMQAVLTFNGIKWSHEYQ 688

  Fly  1311 DACIDKLERFLRGEKNIDRIAAMVPGTPGSVS 1342
            :|.|:|:.|||:|..:.|..|.......|:.|
  Rat   689 EATIEKIIRFLQGRPSQDSSAGSDTSLEGATS 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SarmNP_001246662.1 SAM_SARM1-like_repeat1 1031..1099 CDD:188900 32/67 (48%)
SAM 1031..1096 CDD:197735 30/64 (47%)
SAM_SARM1-like_repeat2 1100..1169 CDD:188901 22/69 (32%)
SAM 1111..1170 CDD:197735 20/59 (34%)
TIR_2 1185..1285 CDD:290400 66/99 (67%)
Sarm1NP_001099287.1 ARM 1. /evidence=ECO:0000255 60..100 5/39 (13%)
ARM 2. /evidence=ECO:0000255 114..153 16/38 (42%)
ARM 3. /evidence=ECO:0000255 155..193 14/40 (35%)
ARM 4. /evidence=ECO:0000255 196..235 22/38 (58%)
ARM 5. /evidence=ECO:0000255 237..280 19/42 (45%)
ARM 6. /evidence=ECO:0000255 281..314 19/32 (59%)
ARM 7. /evidence=ECO:0000255 315..354 14/40 (35%)
ARM 8. /evidence=ECO:0000255 359..402 19/42 (45%)
SAM_SARM1-like_repeat1 409..477 CDD:188900 32/67 (48%)
SAM_SARM1-like_repeat2 479..547 CDD:188901 21/67 (31%)
TIR 561..702 CDD:214587 90/141 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 703..724 4/18 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345439
Domainoid 1 1.000 248 1.000 Domainoid score I2075
eggNOG 1 0.900 - - E1_KOG3678
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9015
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D113262at33208
OrthoFinder 1 1.000 - - FOG0007036
OrthoInspector 1 1.000 - - oto95851
orthoMCL 1 0.900 - - OOG6_107086
Panther 1 1.100 - - LDO PTHR22998
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5128
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.710

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