DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmo and srpk3

DIOPT Version :9

Sequence 1:NP_001356976.1 Gene:nmo / 38890 FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_694973.6 Gene:srpk3 / 566605 ZFINID:ZDB-GENE-101025-2 Length:731 Species:Danio rerio


Alignment Length:617 Identity:114/617 - (18%)
Similarity:171/617 - (27%) Gaps:308/617 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SVSMSLVQGGAAGGAPQ----------GASAILAAAAPYYQPPA----VPQDVQPDRP------- 45
            |:.:::|.......:|:          |..:||::..|..|.|:    .||.:.|..|       
Zfish   134 SIPITVVPSPVVVSSPETPSTPIAPSLGLPSILSSTPPTPQAPSNQPTPPQALSPPPPDFSPPPA 198

  Fly    46 ---------------------------------------IGYGAFGVVWAVTDPRDGRRVALKKL 71
                                                   :|:|.|..||...|.:..|.||||  
Zfish   199 ELLGSDDEEQENPSDYCKGGYYPVKIGDLFNGRYHVVRKLGWGHFSTVWLCWDLQRKRFVALK-- 261

  Fly    72 PNVFQSLVSSKRVFR-----ELKML-CF-------FKHENVLSALDILQPPHLDF------FQEI 117
                  :|.|.:.:.     |:|:| |.       .|.|.::..:|       ||      ...:
Zfish   262 ------VVKSAQHYTETALDEIKLLKCVRDSDPTDSKRERLVQLID-------DFKISGVNGVHV 313

  Fly   118 YVITELLQSDLHKIIVSPQHLSADHI--KVFLYQILRGLKYLHS-ARILHRDIKPGNLLVNSNCV 179
            .::.|:|...|.|.|:...::....|  |..|.|:|.||.|||: .:|:|.||||.|:|:..|.|
Zfish   314 CMVLEVLGHQLLKWIIKSNYMGLPLICVKSILRQVLEGLDYLHTKCKIIHTDIKPENILLEVNEV 378

  Fly   180 L----------------------------------------------------KICD---FGLAR 189
            .                                                    ::.|   ..|.|
Zfish   379 YVRRLAAEATIWQKAGAPPPSGSSVSTAPREKQMGKMSKNKKKKLKRKAKRQQQLLDERLIDLQR 443

  Fly   190 VEE-----PDQA----------------------------------------------------- 196
            :||     |..|                                                     
Zfish   444 MEELDGVLPSDASGNTRALWRLSEDEEDNVKHAQTNGNGALNKQSPESGSSWLEESCNGYGPLRF 508

  Fly   197 ----------------------------------------------------------------- 196
                                                                             
Zfish   509 SSPGSGLSGLSGSILSATSESALSTLSGYSTERSLLSPNSYSAADFLVNPLESQNADKISIKIAD 573

  Fly   197 --------KHMTQEVVTQYYRAPEILMGARHYSSAVDVWSVGCIFGELLGRRILFQAQN------ 247
                    ||.|:::.|:.|||.|:|:|| .|....|:||..|:..||.....||:..:      
Zfish   574 LGNACWVHKHFTEDIQTRQYRALEVLIGA-EYGPPADIWSTACMAFELATGDYLFEPHSGEDYTR 637

  Fly   248 PVQQLELITELLGT-PTMEDMRHACEG--ARTHMLRRAP-------KP-PSFSVLYTLSSHATHE 301
            ....:..|.||||. |.    ..|..|  :|.:..||..       || ..|.||.........:
Zfish   638 DEDHIAHIIELLGAIPP----HFALSGRYSREYFNRRGELRHIANLKPWGLFEVLLEKYEWPLDQ 698

  Fly   302 AVH---LLCQMLVFDPDKRISVTDALAHPYLD 330
            |..   .|..||.|.|:||.:....|.||:::
Zfish   699 AAQFSDFLLTMLEFIPEKRATAAQCLQHPWIN 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmoNP_001356976.1 STKc_NLK 39..411 CDD:173748 103/566 (18%)
srpk3XP_694973.6 STKc_SRPK3 221..729 CDD:271120 101/527 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575932
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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