DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmo and Srpk3

DIOPT Version :9

Sequence 1:NP_001356976.1 Gene:nmo / 38890 FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_006528235.1 Gene:Srpk3 / 56504 MGIID:1891338 Length:590 Species:Mus musculus


Alignment Length:590 Identity:114/590 - (19%)
Similarity:169/590 - (28%) Gaps:285/590 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VSMSLVQGGA----AGGA---------PQGASAILAAAAPYYQPPAVPQ-------DVQPD---- 43
            :.||...||:    .||:         |:.:.:.|..|.|   .|.:.|       :.|.|    
Mouse    23 IRMSANAGGSGSVDCGGSSSSSQTSCGPESSGSELTPATP---APRLLQGLLGSDDEEQEDPKDY 84

  Fly    44 ---------------------RPIGYGAFGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFRE 87
                                 |.:|:|.|..||...|.:..|.||||.:.:...   .::....|
Mouse    85 CKGGYYPVKIGDLFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGH---YTETAVDE 146

  Fly    88 LKML-CFF-------KHENVLSALDILQPPHLDF------FQEIYVITELLQSDLHKIIVSP--Q 136
            :|:| |..       |.|.::..:|       ||      ...:.::.|:|...|.|.|:..  |
Mouse   147 IKLLKCVRDSDPSDPKRETIVQLID-------DFRISGVNGVHVCMVLEVLGHQLLKWIIKSNYQ 204

  Fly   137 HLSADHIKVFLYQILRGLKYLHS-ARILHRDIKPGNLLVNSNCV--------------------- 179
            .|....:|..:.|:|.||.|||: .:|:|.||||.|:|:   ||                     
Mouse   205 GLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILL---CVGDAYIRRLAAEATEWQQSGAQ 266

  Fly   180 -----------LKICDFG---------------------------LARVE--------------- 191
                       .::...|                           |.|:|               
Mouse   267 PPSRSTVSTAPQEVLQIGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAAVQAEDSSSRL 331

  Fly   192 ----------------------------------------------------------------- 191
                                                                             
Mouse   332 ERGSGSTSSSGCHPEGTRAGPSPASSSPVPGGERSLSPSSQTSGFSGSLFSTASCSILSGSSNQR 396

  Fly   192 ----------------------EPDQA-----------------KHMTQEVVTQYYRAPEILMGA 217
                                  ||..|                 ||.|:::.|:.|||.|:|:||
Mouse   397 ETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGA 461

  Fly   218 RHYSSAVDVWSVGCIFGELLGRRILFQAQN------PVQQLELITELLG--TPTMEDMRHACEGA 274
             .|....|:||..|:..||.....||:..:      ....:..|.||||  .|..     |..|.
Mouse   462 -EYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIVELLGDIPPAF-----ALSGR 520

  Fly   275 -------RTHMLRRAPKPPSFSVLYTLS-------SHATHEAVHLLCQMLVFDPDKRISVTDALA 325
                   |...||..|....:.:...|.       ..||..:..|| .|:.:.|:||.|..|.|.
Mouse   521 YSREFFNRRGELRHIPNLKHWGLYEVLMEKYEWPLEQATQFSAFLL-PMMEYIPEKRASAADCLQ 584

  Fly   326 HPYLD 330
            ||:|:
Mouse   585 HPWLN 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmoNP_001356976.1 STKc_NLK 39..411 CDD:173748 102/534 (19%)
Srpk3XP_006528235.1 STKc_SRPK3 91..588 CDD:271120 99/516 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833243
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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