DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmo and Srpk2

DIOPT Version :10

Sequence 1:NP_001356976.1 Gene:nmo / 38890 FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_038963154.1 Gene:Srpk2 / 296753 RGDID:1305107 Length:749 Species:Rattus norvegicus


Alignment Length:225 Identity:56/225 - (24%)
Similarity:86/225 - (38%) Gaps:80/225 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PQGASAILAAAAPYYQPPAVPQDVQPD-------------------------------------- 43
            ||..:.::....|...||.:|..|.|:                                      
  Rat    53 PQQKAPLVPPPPPPPPPPPLPDPVPPEPEEEILGSDDEEQEDPADYCKGGYHPVKIGDLFNGRYH 117

  Fly    44 --RPIGYGAFGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFR-----ELKMLCFFKHEN--- 98
              |.:|:|.|..||...|.:..|.||:|        :|.|.:.:.     |:|:|...:..:   
  Rat   118 VIRKLGWGHFSTVWLCWDMQGKRFVAMK--------VVKSAQHYTETALDEIKLLKCVRESDPSD 174

  Fly    99 -----VLSALDILQPPHLDF----FQEIYV--ITELLQSDLHKIIVSP--QHLSADHIKVFLYQI 150
                 |:..:|       ||    ...|:|  :.|:|...|.|.|:..  |.|....:|..:.|:
  Rat   175 PNKDMVVQLID-------DFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQV 232

  Fly   151 LRGLKYLHS-ARILHRDIKPGNLLVNSNCV 179
            |:||.|||| .:|:|.||||.|:|:   ||
  Rat   233 LQGLDYLHSKCKIIHTDIKPENILM---CV 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmoNP_001356976.1 STKc_NLK 39..411 CDD:173748 50/203 (25%)
Srpk2XP_038963154.1 Protein Kinases, catalytic domain 103..>291 CDD:473864 48/175 (27%)
2A1904 <338..417 CDD:273344
Protein Kinases, catalytic domain <538..747 CDD:473864
Blue background indicates that the domain is not in the aligned region.

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