DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmo and Srpk2

DIOPT Version :9

Sequence 1:NP_001356976.1 Gene:nmo / 38890 FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_038963154.1 Gene:Srpk2 / 296753 RGDID:1305107 Length:749 Species:Rattus norvegicus


Alignment Length:225 Identity:56/225 - (24%)
Similarity:86/225 - (38%) Gaps:80/225 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PQGASAILAAAAPYYQPPAVPQDVQPD-------------------------------------- 43
            ||..:.::....|...||.:|..|.|:                                      
  Rat    53 PQQKAPLVPPPPPPPPPPPLPDPVPPEPEEEILGSDDEEQEDPADYCKGGYHPVKIGDLFNGRYH 117

  Fly    44 --RPIGYGAFGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFR-----ELKMLCFFKHEN--- 98
              |.:|:|.|..||...|.:..|.||:|        :|.|.:.:.     |:|:|...:..:   
  Rat   118 VIRKLGWGHFSTVWLCWDMQGKRFVAMK--------VVKSAQHYTETALDEIKLLKCVRESDPSD 174

  Fly    99 -----VLSALDILQPPHLDF----FQEIYV--ITELLQSDLHKIIVSP--QHLSADHIKVFLYQI 150
                 |:..:|       ||    ...|:|  :.|:|...|.|.|:..  |.|....:|..:.|:
  Rat   175 PNKDMVVQLID-------DFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQV 232

  Fly   151 LRGLKYLHS-ARILHRDIKPGNLLVNSNCV 179
            |:||.|||| .:|:|.||||.|:|:   ||
  Rat   233 LQGLDYLHSKCKIIHTDIKPENILM---CV 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmoNP_001356976.1 STKc_NLK 39..411 CDD:173748 50/203 (25%)
Srpk2XP_038963154.1 PKc_like 103..>291 CDD:419665 48/175 (27%)
2A1904 <338..417 CDD:273344
PKc_like <538..747 CDD:419665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166336805
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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