DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmo and Srpk3

DIOPT Version :9

Sequence 1:NP_001356976.1 Gene:nmo / 38890 FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster
Sequence 2:XP_006229620.1 Gene:Srpk3 / 293854 RGDID:727856 Length:593 Species:Rattus norvegicus


Alignment Length:604 Identity:112/604 - (18%)
Similarity:170/604 - (28%) Gaps:314/604 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 MSLVQGGA----AGGA---------PQGASAILAAAAPYYQPPAVPQ-------DVQPD------ 43
            ||...||:    .||:         |:.:|:.||.|.|   .|.:.|       :.|.|      
  Rat    25 MSASAGGSGGMDCGGSSSSSQTSCGPESSSSELAPATP---APRLLQGLLGSDDEEQEDPKDYCK 86

  Fly    44 -------------------RPIGYGAFGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFRELK 89
                               |.:|:|.|..||...|.:..|.||||.:.:...   .::....|:|
  Rat    87 GGYYPVKIGDLFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGH---YTETAVDEIK 148

  Fly    90 ML-CFF-------KHENVLSALDILQPPHLDF--------FQEIYVITELLQSDLHKIIVSP--Q 136
            :| |..       |.|.::..:|       ||        ..::.::.|:|...|.|.|:..  |
  Rat   149 LLKCVRDSDPSDPKRETIVQLID-------DFRISGVNGVRPDVCMVLEVLGHQLLKWIIKSNYQ 206

  Fly   137 HLSADHIKVFLYQILRGLKYLHS-ARILHRDIKPGNLLV-------------------------- 174
            .|....:|..:.|:|.||.|||: .:|:|.||||.|:|:                          
  Rat   207 GLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQSGAQPPS 271

  Fly   175 ----------------------------------------------------------------- 174
                                                                             
  Rat   272 RSTVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAAVQTEDSSSRLEQG 336

  Fly   175 -----NSNC---------------------------------------------VLK-------- 181
                 :|.|                                             ||.        
  Rat   337 SGSTSSSGCHPEGTRAGPSPASSSPVPTGGERSLSPSSQTSGFSGSLFSTASCSVLSGSSNQRET 401

  Fly   182 ------ICDFG----LARVEEPDQA-----------------KHMTQEVVTQYYRAPEILMGARH 219
                  ...||    |....||..|                 ||.|:::.|:.|||.|:|:|| .
  Rat   402 GGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGA-E 465

  Fly   220 YSSAVDVWSVGCIFGELLGRRILFQAQN------PVQQLELITELLGTPTMEDMRHACEGARTHM 278
            |....|:||..|:..||.....||:..:      ....:..|.||||     |:           
  Rat   466 YGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIVELLG-----DI----------- 514

  Fly   279 LRRAPKPPSFSV-----------------LYTLSSHATHEAV---------------HLLCQMLV 311
                  ||:|::                 ::.|.....:|.:               ..|..|:.
  Rat   515 ------PPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSAFLLPMME 573

  Fly   312 FDPDKRISVTDALAHPYLD 330
            :.|:||.|..|.|.||:|:
  Rat   574 YIPEKRASAADCLQHPWLN 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmoNP_001356976.1 STKc_NLK 39..411 CDD:173748 98/550 (18%)
Srpk3XP_006229620.1 PKc_like 91..591 CDD:304357 95/532 (18%)
S_TKc 102..591 CDD:214567 95/521 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166336806
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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