DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmo and sma-5

DIOPT Version :9

Sequence 1:NP_001356976.1 Gene:nmo / 38890 FlyBaseID:FBgn0011817 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001041297.1 Gene:sma-5 / 181373 WormBaseID:WBGene00004859 Length:509 Species:Caenorhabditis elegans


Alignment Length:382 Identity:121/382 - (31%)
Similarity:198/382 - (51%) Gaps:48/382 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 QPDRPIGYGAFGVVWAVTDPRDGRRVALKKLPNVFQSLVSSKRVFRELKMLCFFKHENVLSALDI 105
            :|.:.||.||||:|....:....::||:||:.:...:...::|..||:::|.:..|.|::...||
 Worm   106 EPTQNIGSGAFGIVCEAVETSSNQKVAIKKVAHASATPTLARRTLREIRVLRYINHPNIVPLRDI 170

  Fly   106 LQ---PPHLDFFQEIYVITELLQSDLHKIIVSPQH-LSADHIKVFLYQILRGLKYLHSARILHRD 166
            .:   |..:|    ::::.:|:|::||.||...:. |...:|..||.|:||||:|||:|.|.|||
 Worm   171 FRTKGPLGID----VFLVMDLMQNNLHHIIYGNEDPLEEHYINAFLGQLLRGLEYLHAACIAHRD 231

  Fly   167 IKPGNLLVNSNCVLKICDFGLARVEEPDQAKH--------MTQEVVTQYYRAPEILMGARHYSSA 223
            :||.|||||.:..|:|.|||:|:..:....||        |||.|.|..|||||:|.....:|:|
 Worm   232 LKPSNLLVNQDGTLRIADFGMAKCADNSSKKHDDEEHCYYMTQHVATLPYRAPELLFVLPEHSTA 296

  Fly   224 VDVWSVGCIFGELLGRRILFQAQNPVQQLELITELLGTPTMEDMRHA-CEGARTHML-----RRA 282
            ||:|:|||||||::.|..:...::...|::::..:||.|..|.:... |:  ||..|     |:|
 Worm   297 VDMWAVGCIFGEMVIRNEILPGRSVQGQIKMLLTMLGQPPQEVINEVRCD--RTRKLIQDFGRKA 359

  Fly   283 PKPPSFSVLYTLSSHATHEAVHLLC-------QMLVFDPDKRISVTDALAHPYLDEGRLRYHSCM 340
              ...:..:....:....:.|...|       |:..:|..|||::.|||.|||: :..:...:..
 Worm   360 --DAEWDDIMFCKARGDDQIVRGNCDTIDFVKQLFQYDAQKRINIQDALLHPYI-QRVIPAEAPQ 421

  Fly   341 CKCCFTTSAGMRQYTADFEPSAGQPFDDLWERKLTSV--QQVKEEMHKFIAEQLQTG 395
            .||.|.....|.|            .:||..::|.|:  |.|:...:.....:|.:|
 Worm   422 KKCPFRVKKDMMQ------------VEDLNHQELISMMKQDVRSAENPITYSELHSG 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmoNP_001356976.1 STKc_NLK 39..411 CDD:173748 121/382 (32%)
sma-5NP_001041297.1 STKc_ERK5 102..446 CDD:270842 116/360 (32%)
S_TKc 105..411 CDD:214567 107/312 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D741207at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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