DRSC/TRiP Functional Genomics Resources

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Protein Alignment exex and hoxa3a

DIOPT Version :10

Sequence 1:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_571609.2 Gene:hoxa3a / 58049 ZFINID:ZDB-GENE-000823-3 Length:410 Species:Danio rerio


Alignment Length:242 Identity:72/242 - (29%)
Similarity:101/242 - (41%) Gaps:52/242 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 QAAASAAGGISEQEALQRIRDSREYDSPSPDGMSRSESPTSSHRSSPPISPG-------CEDQQQ 330
            |:|.......|:|:.||.:....||..|            :....||.||.|       .|..||
Zfish    19 QSANGLGYDASQQQYLQALHAESEYHRP------------ACSLQSPGISAGLHTSNEMSEVCQQ 71

  Fly   331 PHGALHPQHLSMRMSDFHDEFKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKP 395
            .:|.      ...::|..|..:.|..|..|..|...         ..:....||...|:..|  |
Zfish    72 INGT------QATVTDTSDNKQPPTAPSGPSSPSSL---------NQIPNIDSAAKNPVHVS--P 119

  Fly   396 IPIPMGHNF--------MPSQLQFEFLARAGMLHHRIPELAAYPHHAILGKTRRPRTAFTSQQLL 452
            .|....|.|        ...|.....::.......:.|..:|        .::|.|||:||.||:
Zfish   120 TPSTRKHIFPWMKESRQNTKQKSCSIISVESCAGDKSPPGSA--------ASKRARTAYTSAQLV 176

  Fly   453 ELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSKK 499
            ||||:|..|:||.||:|.|:|:.|.|:|.|:||||||||||:|:.:|
Zfish   177 ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exexNP_648164.1 Homeodomain 440..496 CDD:459649 35/55 (64%)
hoxa3aNP_571609.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 79..126 12/57 (21%)
Antp-type hexapeptide 127..132 1/4 (25%)
Homeodomain 164..220 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..249 1/2 (50%)
DUF4074 346..408 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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