DRSC/TRiP Functional Genomics Resources

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Protein Alignment exex and hoxc1a

DIOPT Version :10

Sequence 1:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_571606.1 Gene:hoxc1a / 58046 ZFINID:ZDB-GENE-000822-2 Length:302 Species:Danio rerio


Alignment Length:246 Identity:68/246 - (27%)
Similarity:91/246 - (36%) Gaps:104/246 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 SSPPISPGCEDQQQPHGALHPQHLSMRMSDFHDEFKKPIPPHSPIRPQDFPLYAGGHPYQLLAQG 381
            |.|...||..:..:|.   .||         :.:|.:|:.|:.|..|.          :|...:.
Zfish    65 SKPCEDPGRANSTRPP---FPQ---------NQDFYRPVHPNRPQVPS----------FQSCREQ 107

  Fly   382 GSAFHRPLDPSGKPIPIPMGHNFMPSQLQFEFLARA----GMLHHRIPELAAYP----HHAI--- 435
            |      |...|          |.||...|...:.|    |.:::...|:..|.    |.|:   
Zfish   108 G------LSRKG----------FSPSSDTFRTFSSAHCELGPVNNTQTEVRTYDGPVRHSAVEDD 156

  Fly   436 ---------------LGKT------RR----------------------------------PRTA 445
                           .|||      ||                                  .||.
Zfish   157 NTGHGALNTLNETLHSGKTFEWMRVRRNQSRAAKIQLGKCSDRELKTNHGRDSDEDTSSGGSRTN 221

  Fly   446 FTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKR 496
            ||::||.||||:|..||||:|.:|.|:|:.|.||||||||||||||||.|:
Zfish   222 FTTKQLTELEKEFHFNKYLTRARRIEIANPLQLSETQVKIWFQNRRMKQKK 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exexNP_648164.1 Homeodomain 440..496 CDD:459649 38/89 (43%)
hoxc1aNP_571606.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..224 3/25 (12%)
Homeodomain 218..272 CDD:459649 36/53 (68%)

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