Protein Alignment exex and Hoxc5

DIOPT Version :10

• Sequence 1: NP_648164.1
• Gene: exex / 38884
• FlyBaseID: FBgn0041156
• Length: 525
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 245
• Identity: 68/245 - (27%)
• Similarity: 103/245 - (42%)
• Gaps: 50/245 - (20%)

  Fly   264 TASNAAAAAQAAAS--AAGGISEQEALQRIRDSREYDSPSPDGMSRSESPTSSHRSSPPISPGCE 326
            |..|..:|::..||  ..||:..         |..:..|:|..........::.|:.|. .|.|.
  Rat    23 TCGNYGSASEVQASRYCYGGLDL---------SITFPPPAPSNSLHGVDMAANPRAHPD-RPACS 77

  Fly   327 DQQQPHGALHPQHLSMRMSDFHDEFKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDP 391
            ....|..||.           .||       .:|:.|..:...|.....:..|:...........
  Rat    78 AAAAPGHALG-----------RDE-------AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQ 124

  Fly   392 SGKPIPIPMGHNFMPSQLQ-FEFLARAGMLHHRIPELAAYPHHAILGKTRRPRTAFTSQQLLELE 455
            :|:    |.|.:..|:..| :.::.:..|.|..              ..:|.||::|..|.||||
  Rat   125 TGQ----PAGLSQPPAPPQIYPWMTKLHMSHET--------------DGKRSRTSYTRYQTLELE 171

  Fly   456 KQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKR-SKKAQQEA 504
            |:|..|:||:|.:|.|:|:.|.|:|.|:||||||||||||: ||...:||
  Rat   172 KEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEA 221

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
exex	NP_648164.1	Homeodomain	440..496	CDD:459649	33/55 (60%)
Hoxc5	NP_001101586.1	Homeodomain	156..212	CDD:459649	33/55 (60%)