DRSC/TRiP Functional Genomics Resources

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Protein Alignment exex and Cdx4

DIOPT Version :10

Sequence 1:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_001100412.1 Gene:Cdx4 / 302400 RGDID:1561529 Length:288 Species:Rattus norvegicus


Alignment Length:435 Identity:94/435 - (21%)
Similarity:131/435 - (30%) Gaps:206/435 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 SPGGAQDSSQTESGQSSQMPLLVAPMPVG--TGPPHSHPPPPHPRLYVEGFPPPHHVPHPHPALG 160
            :|||...:....||.|.      :|:|..  |..|          :|      ||::.:||    
  Rat    20 NPGGGSTAGVGTSGGSG------SPLPASNFTAAP----------VY------PHYMGYPH---- 58

  Fly   161 TYPLPRLPLMLPANPPGVPSGAAAPPPVSPQPAANHLSHSG--ATMATTTLLPPAQSQPKKSFCI 223
                     |...:|.| ||..|...|.|| |..:..::.|  :||.|..:.....|.|  :|  
  Rat    59 ---------MSNMDPHG-PSLGAWSSPYSP-PREDWSTYPGPSSTMGTVPMNDMTSSSP--AF-- 108

  Fly   224 DALLAKSQHQSGEPQPIIVDDRLAALHYARDQAELNHAFVTASNAAAAAQAAASAAGGISEQEAL 288
                       |.|                |.:.|               .....|||.|...:|
  Rat   109 -----------GSP----------------DYSTL---------------GPTGGAGGASNGGSL 131

  Fly   289 QRIRDSREYDSPSPDGMSRS----ESPTSSHRSSPPISPGCEDQQQPHGALHPQHLSMRMSDFHD 349
                         ||..|.|    :|.||...:||..|                           
  Rat   132 -------------PDAASESLVSIDSGTSGGATSPSRS--------------------------- 156

  Fly   350 EFKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKPIPIPMGHNFMPSQLQFEFL 414
                   .|||        ||                                 :|...:|    
  Rat   157 -------RHSP--------YA---------------------------------WMRKTVQ---- 169

  Fly   415 ARAGMLHHRIPELAAYPHHAILGKTR---RPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGL 476
                                :.||||   :.|..:|..|.|||||:|..|:|::..::.|:|..|
  Rat   170 --------------------VTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNL 214

  Fly   477 MLSETQVKIWFQNRRMKWKRSKKAQQEAKERAKANQQQQQQQQTP 521
            .|||.||||||||||.|.::..|.:....|.:..:.|......:|
  Rat   215 GLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSGSISP 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exexNP_648164.1 Homeodomain 440..496 CDD:459649 29/58 (50%)
Cdx4NP_001100412.1 Caudal_act 13..174 CDD:461413 59/348 (17%)
Homeodomain 179..234 CDD:459649 28/54 (52%)

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