DRSC/TRiP Functional Genomics Resources

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Protein Alignment exex and Hoxd3

DIOPT Version :10

Sequence 1:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:223 Identity:70/223 - (31%)
Similarity:98/223 - (43%) Gaps:33/223 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   297 YDSPSPDGMSRSESPTS--SHRSSPPI---------------SPGCEDQQQPHGALHPQHLSMRM 344
            |..|:......|:.|:|  |.:||.|:               .||..:.|...|...|..|:...
Mouse    50 YPPPAAANSLDSDYPSSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGNQPPGLNSEQ 114

  Fly   345 SDFHDEFKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKPIPIPMGHNFMPSQL 409
            ..     .:|.||..|..|...|...|........:||.:.........|.| .|.......:..
Mouse   115 QP-----PQPPPPPPPTLPPSSPTNPGSGVPAKKTKGGLSASSSSSTISKQI-FPWMKESRQNSK 173

  Fly   410 QFEFLARAG-MLHHRIPELAAYPHHAILGKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVA 473
            |....|.:| ....:.|...|         ::|.|||:||.||:||||:|..|:||.||:|.|:|
Mouse   174 QKNSCATSGENCEDKSPPGPA---------SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 229

  Fly   474 SGLMLSETQVKIWFQNRRMKWKRSKKAQ 501
            :.|.|:|.|:||||||||||:|:.:||:
Mouse   230 NLLNLTERQIKIWFQNRRMKYKKDQKAK 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exexNP_648164.1 Homeodomain 440..496 CDD:459649 35/55 (64%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 32/162 (20%)
Antp-type hexapeptide 161..166 2/5 (40%)
Homeodomain 196..252 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 70/223 (31%)
DUF4074 370..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
Blue background indicates that the domain is not in the aligned region.

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