DRSC/TRiP Functional Genomics Resources

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Protein Alignment exex and Hoxb13

DIOPT Version :10

Sequence 1:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_032293.1 Gene:Hoxb13 / 15408 MGIID:107730 Length:286 Species:Mus musculus


Alignment Length:445 Identity:91/445 - (20%)
Similarity:125/445 - (28%) Gaps:209/445 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 RSQITPSPPAASPTHSAATTGSPVSTYTPALSPGGAQDSSQTESGQSSQMPLLVAPMPVGTGPPH 131
            |:.::.|.|.||  |.||.|..|...|.|...||.|:...|..            |.|   |.|.
Mouse    25 RNLVSHSSPLAS--HPAAPTLMPTVNYAPLDLPGSAEPPKQCH------------PCP---GVPQ 72

  Fly   132 SHPPPPHPRLYVEGFPPPHHVPHPH-------PALGTYP--LPRLPLMLPANP------PGVPSG 181
            ...|.|.|..|..|......|....       .||.|||  .|......|:.|      ||.|. 
Mouse    73 GASPAPVPYGYFGGGYYSCRVSRSSLKPCAQTAALATYPSETPAPGEEYPSRPTEFAFYPGYPG- 136

  Fly   182 AAAPPPVSPQPAANHLSHSGATMATTTLLPPAQSQPKKSFCIDALLAKSQHQSGEPQPIIVDDRL 246
                 |.  ||.|::|..|    ...||..|  .:|:.    |:||....:|..           
Mouse   137 -----PY--QPMASYLDVS----VVQTLGAP--GEPRH----DSLLPVDSYQPW----------- 173

  Fly   247 AALHYARDQAELNHAFVTASNAAAAAQAAASAAGGISEQEALQRIRDSREYDSPSPDGMSRSESP 311
                                          :.|||.:.|..                        
Mouse   174 ------------------------------ALAGGWNSQMC------------------------ 184

  Fly   312 TSSHRSSPPISPGCEDQQQPHGALHPQHLSMRMSDFHDEFKKPIPPHSPIRPQDFPLYAGGHPYQ 376
                         |:.:|.|.|..           :...|.:|...|.|                
Mouse   185 -------------CQGEQNPPGPF-----------WKAAFAEPSVQHPP---------------- 209

  Fly   377 LLAQGGSAFHRPLDPSGKPIPIPMGHNFMPSQLQFEFLARAGMLHHRIPELAAYPHHAILGKTRR 441
               ..|.||.|                                                   .|:
Mouse   210 ---PDGCAFRR---------------------------------------------------GRK 220

  Fly   442 PRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKR 496
            .|..::..||.|||:::..||::::.||.::::...|||.|:.|||||||:|.|:
Mouse   221 KRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exexNP_648164.1 Homeodomain 440..496 CDD:459649 23/55 (42%)
Hoxb13NP_032293.1 HoxA13_N 12..124 CDD:463521 33/115 (29%)
Homeodomain 219..275 CDD:459649 23/55 (42%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q92826 219..248 9/28 (32%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:Q92826 260..275 9/14 (64%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q92826 272..275 1/2 (50%)

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