DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment exex and Gbx2

DIOPT Version :9

Sequence 1:NP_648164.1 Gene:exex / 38884 FlyBaseID:FBgn0041156 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_446160.1 Gene:Gbx2 / 114500 RGDID:621866 Length:348 Species:Rattus norvegicus


Alignment Length:461 Identity:121/461 - (26%)
Similarity:152/461 - (32%) Gaps:166/461 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 SSQMP--LLVAPMPVGTGPPHS------HPPPPHPRLYV-EGFPPPHHVPHPHPALGTYPLPRLP 168
            |:..|  |::...|:|:....|      .||.|.|..:| .|:|              ..:|..|
  Rat     2 SAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYP--------------MFMPYRP 52

  Fly   169 LMLPANPPGVPSGAAAPPPVSPQPAAN------HLSHSGATMATTTLLPPAQSQPKKSFCIDAL- 226
            ::||..||        |||..||.|..      |..|...::.|......||.....|..:..| 
  Rat    53 VVLPPPPP--------PPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLP 109

  Fly   227 ---LAKSQHQSG------EPQPIIVDDRLAALHYARDQAELNHAFVT------ASNAAAAAQAA- 275
               .|..|||..      .|||:............:...|...||:.      |.:||.|.||: 
  Rat   110 GGFSASPQHQEAAAARKFAPQPLPGGGNFDKSEALQADTEDGKAFLAKEGSLLAFSAAEAVQASL 174

  Fly   276 ASAAGGISEQEALQRIRDSREYDSPSPDGMSRSESPTSS-HRSSPPISPGCEDQQQPHGALHPQH 339
            ..|..|..:.|:  ::.|       .|.|...|.|..|. ..||....||    |..|....|  
  Rat   175 VGAVRGQGKDES--KVED-------DPKGKEESFSLESDVDYSSDDNLPG----QTAHKEEDP-- 224

  Fly   340 LSMRMSDFHDEFKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKPIPIPMGHNF 404
                                            ||..:...|.|.|                    
  Rat   225 --------------------------------GHALEETPQSGGA-------------------- 237

  Fly   405 MPSQLQFEFLARAGMLHHRIPELAAYPHHAILGKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKR 469
                        ||..             ...||.||.||||||:|||||||:|...||||..:|
  Rat   238 ------------AGST-------------TSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTER 277

  Fly   470 FEVASGLMLSETQVKIWFQNRRMKWKRSKKAQQEAK-------------------ERAKANQQQQ 515
            .::|..|.|||.||||||||||.||||.|.....:|                   ..|..:|.||
  Rat   278 SQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVHVSRFAIRSQHQQ 342

  Fly   516 QQQQTP 521
            .:|..|
  Rat   343 LEQARP 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
exexNP_648164.1 Homeobox 442..495 CDD:278475 35/52 (67%)
Gbx2NP_446160.1 Homeobox 250..304 CDD:395001 36/53 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.