DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pbl and TOPBP1

DIOPT Version :9

Sequence 1:NP_523965.2 Gene:pbl / 38879 FlyBaseID:FBgn0003041 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_008958.2 Gene:TOPBP1 / 11073 HGNCID:17008 Length:1522 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pblNP_523965.2 PTCB-BRCT 117..180 CDD:289507
RhoGEF 852..1032 CDD:279015
PH_Ect2 1023..1186 CDD:269936
TOPBP1NP_008958.2 BRCT 105..176 CDD:278934
PTCB-BRCT 203..266 CDD:289507
BRCT 355..431 CDD:278934
BRCT 548..620 CDD:278934
PTCB-BRCT 649..720 CDD:289507
Nuclear localization signal. /evidence=ECO:0000255 852..858
BRCT 902..977 CDD:278934
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1018..1058
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1083..1118
BRCT 1260..1337 CDD:278934
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1501..1522
Nuclear localization signal. /evidence=ECO:0000255 1517..1520
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D305707at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.010

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