DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pbl and ect2l

DIOPT Version :9

Sequence 1:NP_523965.2 Gene:pbl / 38879 FlyBaseID:FBgn0003041 Length:1311 Species:Drosophila melanogaster
Sequence 2:XP_009291443.1 Gene:ect2l / 100332935 -ID:- Length:981 Species:Danio rerio


Alignment Length:886 Identity:173/886 - (19%)
Similarity:310/886 - (34%) Gaps:237/886 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 CDLETDDLPPSENDLKRKRESFDNVSLMSVDSFALPASTKKPKLIRTGSISRTLRRSVSFVAEPL 502
            |....|.|.|        ||:.|....::.   :|.|..::....|...|.:|:|.:::...:..
Zfish   188 CAASLDILTP--------REAADVYGTLNE---SLTAPQEQEDRWREHKIRQTIRENLAEHKKAA 241

  Fly   503 MKTLRPRRSSVADASSFVGSEAADNSI----------CSLASSINLTLNDSIRKPVKEKLRSFCG 557
            :||.|...::....:||.|:.....|:          |.|.:|::   :..||||          
Zfish   242 LKTRRAWLNASKLGTSFTGTIHKPLSLTAALVHLGEKCRLKNSLS---SVEIRKP---------- 293

  Fly   558 RITRSSSRRHDRGVDGTPECTTLL---DSGFKTPKAPK--------LRSTATP------------ 599
                    |.|..:..|.:.|:||   .|.|..|....        |.|:..|            
Zfish   294 --------RLDLSMKSTLDSTSLLKTTSSLFNRPVMSSYYPLPHFLLVSSKVPGYELLLAAVQVS 350

  Fly   600 ----------KTAKRLFGPVSGVVSALTLTNPSTPTPNPNPNTNCTATLDVNDTS-----IHTF- 648
                      .|.:.||.....|:....|.:.....|....:...|..|.:.:.:     :..| 
Zfish   351 VLVLPYDSQGMTLEVLFSLAERVIQGRMLQSVGILVPGSTDDIMLTDELRITEKTVLKPCVREFW 415

  Fly   649 -AFCAAAVTPAMPPSSSSSSSSPI--LSTSIAVHSSVQVIKSPEESTTRRNSPAPI--------- 701
             ..|...|     |:|...|.:..  |:.|:|....::.:    .:.|..|..||.         
Zfish   416 EKLCGWVV-----PASEGGSLNIFAPLAASVAGMGLLRKL----STLTGLNVKAPTGICTGSYQH 471

  Fly   702 ---------EEPMAMVVDEHTTLT-----------------KPEPKNNHTHILKSD--------W 732
                     |.|..:.:.|...||                 :.||:   .|.:..:        :
Zfish   472 IVSEWCGSGEFPPLLYLHEPVLLTWCRQAEWIEEACKDLRKQLEPQ---LHFMCQEIRGRILGQF 533

  Fly   733 FWYTIQN---GYANE-MDYLFGDYLDSITNTPNTDRRDSLPISFNKRKRKRFSQRIQLEGTPLGS 793
            .|..|:.   .:.:| |:.|....:..:...|:.      ||.|                  ||.
Zfish   534 LWDRIKMPVFSFKSEVMECLVHGLVALMNEAPDD------PIDF------------------LGH 574

  Fly   794 GKRRSSVSDAGLLSVSNSLF----DCTTSPDKLESDKLLHAEPEASDATPAKKSMRFNHFMDFYT 854
            ...:||.:..||.:: :.||    ....||:. ||.|:|.::.:...|.          |.:...
Zfish   575 FLLKSSDNSNGLKNI-DPLFLTENTSVNSPNP-ESPKVLLSDADRRSAV----------FGELLN 627

  Fly   855 TESNYVGILDTILNLFKNKLEELAETNDPLLNKSEIKTIFGNFLPIHEVHQSMLEH--------- 910
            :|..||..|..:..::.:.|....::|..:::...:.|:|...|.|.|.::..:.|         
Zfish   628 SERTYVRQLQAVATVYYSPLRAALDSNRAIISSVNLITLFCPLLDILETNKYNIYHFQTLSISFL 692

  Fly   911 -------------LRKLHANWRE----DCLIGDIIIQHRDELIKAYPPYVNFFEQMKEQLQYCDR 958
                         |::|...|:|    .| :||:.::....| :.|..:.|.:....:.:..|..
Zfish   693 LHSGLHYWVCSAFLKELAERWQEWSPLQC-VGDVWVKFCTRL-RVYTNFFNNYPASLKTIDKCRE 755

  Fly   959 EYPRFHAFLKINQTKPECGRQGLQDLMIRPVQRLPSISLLLNDILKHTTSGNADHGRLEEALKAI 1023
            ..|.|..|||............||:|::.|..|:.....||..:..||...:.|:.:|..||..:
Zfish   756 MLPVFRNFLKRYDRTIATRMLSLQELLLTPSARVEEYVALLQALTLHTPPEHPDYTQLTSALDTL 820

  Fly  1024 KQVTLHINEDKRRTESRMAIFDIFNDIEGCP------AHLVSSNRSFILKCEVNELSDSL----- 1077
            ......|::.|:..:..:.:.::.|.|:.||      .:|:|:....:|.|...:::.||     
Zfish   821 MTYRGFIHKLKKSLDRDLRMVEVQNTIQSCPNLLEGSRYLISTQDVALLNCLNGDIAASLRMYEH 885

  Fly  1078 -SGRGDSLVLYLFSDSIELCKRRSKGFNTAKSPSTAKTHKHLKLISLNTIRLVIDISDS---PRA 1138
             |..|    |:||:|::.|.:|.........:.:|  ||..|..::|:.:.|. :|:|:   ..|
Zfish   886 VSDVG----LFLFNDALVLTERSVSSMPFCVAVNT--THTFLASVALHCLNLT-EITDTKYVQNA 943

  Fly  1139 FGLLLRGDKEKLYTFTISDEETDKSVYVKKLCNQIAAHTCR 1179
            |.|    ...|......:|.|.:|...:..|.:.|.|...|
Zfish   944 FQL----QSPKRQWICATDREEEKIRLLSALRSAINAAITR 980

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pblNP_523965.2 PTCB-BRCT 117..180 CDD:289507
RhoGEF 852..1032 CDD:279015 42/205 (20%)
PH_Ect2 1023..1186 CDD:269936 39/172 (23%)
ect2lXP_009291443.1 F-box-like 121..164 CDD:289689
DUF4347 331..>468 CDD:290951 24/145 (17%)
Dpy-30 546..578 CDD:253069 9/55 (16%)
RhoGEF 624..829 CDD:279015 42/206 (20%)
PH-like <893..980 CDD:302622 23/93 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3524
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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