DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32369 and lonrf2

DIOPT Version :9

Sequence 1:NP_001246660.1 Gene:CG32369 / 38873 FlyBaseID:FBgn0052369 Length:1066 Species:Drosophila melanogaster
Sequence 2:XP_012812624.1 Gene:lonrf2 / 733984 XenbaseID:XB-GENE-6045285 Length:775 Species:Xenopus tropicalis


Alignment Length:1026 Identity:249/1026 - (24%)
Similarity:393/1026 - (38%) Gaps:319/1026 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PPSSPIQCYLPHNDSQNSLHYLLAESFAKVGSLPEAFDVYELIASRQFDGHVPLDKLNTLASALT 84
            ||:.|..|         |....:||...:.|:...|.::|......|....:.|.|.:.||.|  
 Frog    13 PPAPPGLC---------SEMLGVAEESYRAGNFELAAEIYGSQLEEQPQRFLWLRKGDALALA-- 66

  Fly    85 THIRQMGGIATPTPTPTPTPMSAVHVKSPRISERLDMMPWSRYHHQGKQNQAEQGEFLRGVGESM 149
                                        .|:::.||.  ::|.....:....|.|..:..:..::
 Frog    67 ----------------------------GRVTDALDC--YTRAAMLSQLRPEELGVLVGSIARNI 101

  Fly   150 DE-------AGDSPLDMH---------SPTRELRVPSPLQDLEDFDPLMCPLCSDILRCPVTTNC 198
            .|       |...|...|         :|..|   |:|:.|:     ..||:|..:|..|||..|
 Frog   102 REKELGLPCAQREPGTAHPQYSVSPYSAPPAE---PTPISDI-----FSCPMCRLLLLDPVTLLC 158

  Fly   199 GHTFCRQC--CETITQCNICQVRFPRIQASSPGPPVCALTTTTASGAGSSLFTAPSNHNANLSLI 261
            ||:.|::|  .:...||:.|                           |..|              
 Frog   159 GHSVCKRCLRAQEPLQCSQC---------------------------GDKL-------------- 182

  Fly   262 SFPVGYGVQLSSSVQRLAAPPMTVTTTTVASTTATATTTMASTSAAAALGLSAYPSAHGGGIGST 326
                                                            .|.:.:|       |.:
 Frog   183 ------------------------------------------------KGKAEWP-------GVS 192

  Fly   327 AMKFMPDVLVRRLVEKWWGPDLQAKKISEKASSCMHLNLLDDALKFCNASLE----KSPANFKSL 387
            .|....:|::..|::||...:.:.:::|.:.......:.|..|::..:|:||    .||.:....
 Frog   193 LMDSKVNVVLGNLLQKWLKEETKVRRLSVEGELLRESSNLMGAMEKYSAALELSKYPSPCDSWLA 257

  Fly   388 CLRAEVLLKLSHYQSSLADIENALRTRCTSPKAHYLRALALSGLGRLEEALYNGFLAICLDKKTN 452
            ..|||:.|.:.:|..:::|.:...:....|.|.||::|.|||||||.||||......:.|:.:.:
 Frog   258 AERAELYLAMKNYNQAISDADTVCKKEPLSHKGHYVKARALSGLGRTEEALKEFLYCVALNPEWS 322

  Fly   453 LSNSEIFQHDLAKILQRLLAHMPKNRTSLSSATVPVFQQQHRNFATSRAPYPLLWEQVRRRRKQQ 517
            |...|         .|:::..|          ..|.|:....:..|   |...|....|.:..  
 Frog   323 LMKIE---------AQKIICEM----------LFPAFENVQASLGT---PLRALTSHTRLKPS-- 363

  Fly   518 HHHHHHHHHHHVHLDDVEDEFGHYNNYIMAGDDMEEEVEVEVEGGEPGSLHLDGDFLFPSALDFM 582
                                       :...:...|:..:      ||   ...|..|.....|:
 Frog   364 ---------------------------LTNSNTCTEDFSL------PG---CSKDSKFQITKSFV 392

  Fly   583 DHHRHQRHVFEQKQFDLQPRRHANRKHCKRKWSVAMESMG-------GKDLE-----EEDVDRAH 635
                 :..:|..::|..:|      ..|....|.|.||:|       |..|:     .||...|.
 Frog   393 -----ESDIFVMEEFKDEP------VSCMLPHSKAEESLGNVLVSLPGASLKRKLNSSEDYQSAT 446

  Fly   636 A----AGESQRCSRLFAGVLDRTQQELQRLKKLDKSAPSLAVSSVAGQLIDASDFDCVVCSRTLW 696
            |    .|...:|                     ::||..|.:..:...|:||.||:|.:|.|..:
 Frog   447 AKVRKTGAESKC---------------------EQSATKLVLRDIPVALVDACDFECSLCMRLFY 490

  Fly   697 KPVVTPCGHTYCLVCLDRCMDYNSPCPLCMSPLVEFNVNASASTSASQHPNPNQNQIHLHPGSSS 761
            :||.||||||:||.||:||:|:|..||||...|.::                             
 Frog   491 EPVATPCGHTFCLKCLERCLDHNPHCPLCKEDLAQY----------------------------- 526

  Fly   762 PVPFALAKRPVTKFL--EAAMKRFIPDH-------YEARFRQEIDQEPSVPVFICTAAFPAVPCP 817
                 ||.|...|.|  |..:.|::|:.       |:...::..:....||:|:||.|||.:|||
 Frog   527 -----LAYRAYKKTLLTEELITRYLPEELTERKKIYDEEMKELSNLHKDVPIFVCTMAFPTIPCP 586

  Fly   818 LFVCEPRYRLMVRRAVESGDKTFGIVQPNGGKSRYYDVGTILDIRDCVQLGDGCSILSTIGCKRF 882
            |.|.|||||||:||::|:|.|.||:...:..|. :.|.|.:|.:||.....||.|::.|||..||
 Frog   587 LHVFEPRYRLMIRRSMETGTKQFGMCIADDLKG-FADYGCMLQVRDVKFFPDGRSVVDTIGLNRF 650

  Fly   883 KILARNEKDGYETAKVEYICDEPIADEQVKILAGMQGVVLAKASEWFESLSTEQKHEILQSFGQM 947
            |:|:..::|||.||.:||:.|:.:..::.:.|..:...|..:|..||.||....|.:||..||||
 Frog   651 KVLSHGQRDGYNTANIEYLEDKKMEGQEYEELLVLHNSVYDQALGWFTSLKDNMKSQILSHFGQM 715

  Fly   948 PPLEPNWELISDGPAWAWWIIALLPLSQQLKVDILATTSLEKRLRAIDKTL 998
            |..|.:.:...:||||.||::|:|||..:.::.|||.|||:.||.||.:.|
 Frog   716 PSKESDPQNGENGPAWCWWMLAVLPLESKAQLTILAMTSLKDRLHAIKRIL 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32369NP_001246660.1 RING 183..>206 CDD:302633 11/22 (50%)
TPR_11 349..412 CDD:290150 14/66 (21%)
TPR repeat 350..378 CDD:276809 4/27 (15%)
TPR_11 383..449 CDD:290150 23/65 (35%)
TPR repeat 383..413 CDD:276809 6/29 (21%)
RING 687..729 CDD:238093 23/41 (56%)
LON 791..1005 CDD:271862 88/208 (42%)
LON_substr_bdg 802..1001 CDD:280370 88/197 (45%)
lonrf2XP_012812624.1 TPR_16 27..87 CDD:290168 15/91 (16%)
TPR repeat 53..85 CDD:276809 9/63 (14%)
TPR repeat 90..113 CDD:276809 3/22 (14%)
TPR_11 253..319 CDD:290150 23/65 (35%)
TPR repeat 253..283 CDD:276809 6/29 (21%)
TPR repeat 288..311 CDD:276809 15/22 (68%)
RING 481..523 CDD:238093 23/41 (56%)
LON_substr_bdg 571..771 CDD:280370 88/197 (45%)
LON 571..766 CDD:271862 87/195 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 179 1.000 Domainoid score I3473
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 356 1.000 Inparanoid score I2183
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207900at33208
OrthoFinder 1 1.000 - - FOG0001000
OrthoInspector 1 1.000 - - otm49519
Panther 1 1.100 - - LDO PTHR23327
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2251
SonicParanoid 1 1.000 - - X746
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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