DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32369 and Rad18

DIOPT Version :9

Sequence 1:NP_001246660.1 Gene:CG32369 / 38873 FlyBaseID:FBgn0052369 Length:1066 Species:Drosophila melanogaster
Sequence 2:NP_001161202.1 Gene:Rad18 / 58186 MGIID:1890476 Length:556 Species:Mus musculus


Alignment Length:421 Identity:84/421 - (19%)
Similarity:154/421 - (36%) Gaps:121/421 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   669 PSLAVSSVAGQLIDASDFDCVVCSRTLWKPVVTP-CGHTYCLVCLDRCMDYNSPCPLCMSPLVEF 732
            |.|||......|:     .|.:|.......|:.| |.|.||.:|:.:.:.|.:.||.|...:.| 
Mouse    11 PGLAVMKTIDDLL-----RCGICFEYFNIAVIIPQCSHNYCSLCIRKFLSYKTQCPTCCVAVTE- 69

  Fly   733 NVNASASTSASQHPNPNQNQI-------------HLHPGSSSPVPFALAKRPVTKFLEAAMKRFI 784
                         |:...|::             ||       :.|||...|::.....:.|..:
Mouse    70 -------------PDLRNNRLLDELVKSMNFARTHL-------LQFALESPPISPVSSTSKKVVV 114

  Fly   785 PDHYEARFRQEIDQEPSVPVFICTAAFPAVPCPLFVCEPRYRLMVRRAV-ESGDKTFGIV-QPNG 847
            ..|     ..:..|.|                    .:...|||.:..: |:||..|.:: :.|.
Mouse   115 KVH-----NADAAQHP--------------------VKQANRLMDKFLIRETGDCVFELLGKENE 154

  Fly   848 GK-SRYYDVGTILDIRDCVQLGDGCSILSTIGCKRFKILARNEKDG-----YETAKVEYICDEPI 906
            .| |...::.|..:|::...||.             .:|..::.:|     ..|.|::       
Mouse   155 RKFSPQKELSTSAEIKETSLLGK-------------PVLGLSDANGPVTPSTSTMKLD------- 199

  Fly   907 ADEQVKILAGMQGVVLAK--ASEWFES-LSTEQKHEILQSFG-QMPPLEPN-WELISDGPAWAWW 966
                .|:...:.||.:.:  .::..:| ||.|:|.|.|:|.. :..||... :.|:||       
Mouse   200 ----TKVSCPVCGVSIPENHINKHLDSCLSREEKKESLRSSAHKRKPLPKTVYNLLSD------- 253

  Fly   967 IIALLPLSQQLKVDILATTSLEKRLRAIDKTLDWLHDLSHPQQPAHHPMNHHQQAPQSPQQAHHL 1031
                ..|.::||...|:....:::|  |.:..:::| :.:.|..|.||    :.|.:..|:...:
Mouse   254 ----RDLKKKLKQYGLSVQGNKQQL--IKRHQEFVH-MYNAQCDALHP----KSAAEIVQEIESM 307

  Fly  1032 DLDCEEQEGASSGSDECCLFAETGNEPHTDE 1062
            :......| ||..::...:|.:...|...:|
Mouse   308 EKTRMRLE-ASKLNENVMVFTKNQTEKEIEE 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32369NP_001246660.1 RING 183..>206 CDD:302633
TPR_11 349..412 CDD:290150
TPR repeat 350..378 CDD:276809
TPR_11 383..449 CDD:290150
TPR repeat 383..413 CDD:276809
RING 687..729 CDD:238093 13/42 (31%)
LON 791..1005 CDD:271862 43/226 (19%)
LON_substr_bdg 802..1001 CDD:280370 40/211 (19%)
Rad18NP_001161202.1 rad18 13..310 CDD:273165 77/389 (20%)
RING 25..63 CDD:238093 12/37 (32%)
ZnF_Rad18 201..224 CDD:128973 4/22 (18%)
SAP 248..282 CDD:280251 9/46 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2251
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.