Sequence 1: | NP_001014576.1 | Gene: | Clk / 38872 | FlyBaseID: | FBgn0023076 | Length: | 1027 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_571852.1 | Gene: | ncoa2 / 81884 | ZFINID: | ZDB-GENE-010406-3 | Length: | 1505 | Species: | Danio rerio |
Alignment Length: | 1528 | Identity: | 285/1528 - (18%) |
---|---|---|---|
Similarity: | 446/1528 - (29%) | Gaps: | 608/1528 - (39%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 KDDTKSFLCRKSRNLSEKKRRDQFNSLVNDLSALISTS-------SRKMDKSTVLKSTIAFLKNH 65
Fly 66 NEATDRSKVFEIQQDWKPAFLSNDEYTH------------------LMLESLDGFMMVFSSMGSI 112
Fly 113 FYASESITSQLGYLPQDLYNMTIYDLAYEMDH-EALLNIF----MNPTP--VIEPRQTDISSSNQ 170
Fly 171 ITFYTHLRRGGMEKVDANAYELVKFVGYFRNDTNTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAE 235
Fly 236 VDKKLVFVGTGRV---QNPQLIREMSIIDPTSNEFTSKHSMEWKFLFLDH---RAPPIIGYMPFE 294
Fly 295 VLGTSGYDYYHFD---DLDSIVACHEELRQTGEGKSCYYRFLTKGQQWIWLQTDYYVSYHQFNSK 356
Fly 357 PDYVVCTH------KVVSYAEVLKDSRKEGQ-----KSGNS--NSITNNGSSKVIAST------- 401
Fly 402 ---------------GTSSKSA---SATTTLRDFELS----SQNLDSTLLGNSLASLGTETAATS 444
Fly 445 PAVDSSPMWSASAVQPSGSCQINPLKTSRPASSYGNISSTGISPKAKRKCYFYNNRGNDSDSTSM 509
Fly 510 STDSVTSRQSMMTH-----------VSSQSQRQR---------------------------SHHR 536
Fly 537 EHHRENHHNQSHHHMQQ--------------------------------QQQHQNQQQQH----- 564
Fly 565 QQHQQLQQQLQH--------------------------TVGTP----KMVPLLP----------- 588
Fly 589 -----------------------------IASTQIMAG--------------NACQFPQP----- 605
Fly 606 AYPLASPQLV---------------APTFLEPPQ---YLTAIPMQPVIAPFPVAPVLSPLPVQS- 651
Fly 652 QTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLILQQQ-----------------------NELRI 693
Fly 694 VSEQ-----------------------------LLLSRYT-------------------YLQPM- 709
Fly 710 -------MSMGF---------APGNMTA-----------AAVGNLGASGQRG------------- 734
Fly 735 ---------------LNFTGSNAVQPQFNQYGFALNSEQMLNQ-----------QDQQMMMQQQQ 773
Fly 774 NLHTQHQH-----NLQQQ----------HQSHSQLQQ---------------------------- 795
Fly 796 HTQQQHQQQQQQQQQ--------------------------------QQQQQ-------QQQQQQ 821
Fly 822 QQQQQQQQQQQQQLQLQQQNDILLREDIDDIDAFLNLSPLHSL------GSQSTINPFNSSSNNN 880
Fly 881 NQSY--NGGSNLNNGNQNNNNRSSNPPQNNNEDSLLSCMQMATESSPSINFHMGISDDGSETQSE 943
Fly 944 DNKMMHTS----GSNLVQQQ-----------------QQQQQQQQILQQHQQQSNSFFSSNPFLN 987
Fly 988 ---SQNQNQNQLPNDLEILPYQMSQEQSQNLFN 1017 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Clk | NP_001014576.1 | HLH | 16..68 | CDD:238036 | 12/58 (21%) |
PAS | 93..153 | CDD:214512 | 22/82 (27%) | ||
PAS | 264..366 | CDD:238075 | 21/113 (19%) | ||
PAS_11 | 265..368 | CDD:291273 | 22/114 (19%) | ||
ncoa2 | NP_571852.1 | basic helix-loop-helix DNA-binding domain | 18..86 | 15/77 (19%) | |
HLH | 36..89 | CDD:197674 | 13/64 (20%) | ||
PAS | 119..176 | CDD:214512 | 21/56 (38%) | ||
PAS A domain | 125..184 | 18/58 (31%) | |||
PAS_11 | 267..375 | CDD:291273 | 21/110 (19%) | ||
PAS B domain | 269..330 | 14/63 (22%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 392..515 | 27/124 (22%) | |||
NCOA_u2 | 460..567 | CDD:293270 | 21/109 (19%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 542..562 | 3/20 (15%) | |||
SRC-1 | 629..705 | CDD:285981 | 7/75 (9%) | ||
NR Box | 630..634 | 1/3 (33%) | |||
NR Box | 686..690 | 1/3 (33%) | |||
DUF4927 | 728..803 | CDD:292896 | 6/74 (8%) | ||
NR Box | 742..746 | 0/3 (0%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 835..871 | 10/36 (28%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 939..962 | 0/22 (0%) | |||
Nuc_rec_co-act | 1061..1106 | CDD:285967 | 5/51 (10%) | ||
LLXXLXXXL motif. /evidence=ECO:0000255 | 1069..1077 | 0/7 (0%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1246..1265 | 12/18 (67%) | |||
HAT-like domain | 1310..1378 | 14/68 (21%) | |||
DUF1518 | 1354..1410 | CDD:284808 | 8/55 (15%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1475..1505 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3561 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |