Protein Alignment Clk and ahrrb

DIOPT Version :10

• Sequence 1: NP_001014576.1
• Gene: Clk / 38872
• FlyBaseID: FBgn0023076
• Length: 1027
• Species: Drosophila melanogaster
• Sequence 2: NP_001029092.1
• Gene: ahrrb / 565319
• ZFINID: ZDB-GENE-051018-2
• Length: 573
• Species: Danio rerio
• Alignment Length: 300
• Identity: 75/300 - (25%)
• Similarity: 128/300 - (42%)
• Gaps: 81/300 - (27%)

  Fly     4 ESDDKDDTKSFLCRKSRNLSEKKRRDQFNSLVNDLSALISTSSR---KMDKSTVLKSTIAFLK-- 63
            :..:|.|.||       |.| |:.||:.|:.::.|.:|:..|:.   |:||.:||:.:::||:
Zfish    21 QKPEKADQKS-------NPS-KRHRDRLNAELDRLGSLLPFSAEVITKLDKLSVLRLSVSFLRVK 77

  Fly    64 --------NHNEATDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFSSMGSIFYASESIT 120
                    ..|.:.|.|.. |.:::.:|..:.:|    |:|:||.||.:|.||.|.|||||.:|.
Zfish    78 SFFQAVQEKENHSADVSPT-ETRKEVQPCVVESD----LLLQSLSGFALVVSSDGIIFYASSTII 137

  Fly   121 SQLGYLPQDLYNMTIYDLAY---EMDHEALLNIFMNPTPVIEPRQTDISSSNQITFYTHLRRGGM 182
            ..||:...|:.:..::|..:   ..:....::..||      |.|.| :..:.:|.:.:    ..
Zfish   138 DYLGFHQTDVMHQKVFDYIHVDERQEFRKQIHWAMN------PGQQD-TDEDVVTAHLY----SA 191

  Fly   183 EKVDANAYELVK-----FVGYFRNDTNTSTGSSSEVSNGS----NGQ------------------ 220
            |:.|..:.||..     |:...|...::::|..:....||    .||
Zfish   192 EQPDGVSPELTPFLTRCFIARMRCLLDSTSGFLNMQFQGSLKFLQGQRRRTLSGALLPPQLALFC 256

  Fly   221 ---PAVLPRIFQQNPNAEVDKKLVFV-----GTGRVQNPQ 252
               |.|||.|      .|:..|.|.|     .:||.:..|
Zfish   257 VAVPLVLPSI------TELRMKSVTVKCKNRSSGRSEKRQ 290

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clk	NP_001014576.1	bHLH-PAS_dCLOCK	11..86	CDD:381578	23/87 (26%)
		PAS	93..153	CDD:214512	20/62 (32%)
		PAS_11	265..368	CDD:464214
ahrrb	NP_001029092.1	bHLH_SF	26..85	CDD:469605	19/66 (29%)
		PAS	110..>183	CDD:395786	26/83 (31%)