DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Clk and ncoa3

DIOPT Version :9

Sequence 1:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster
Sequence 2:XP_021335474.1 Gene:ncoa3 / 564519 ZFINID:ZDB-GENE-051107-8 Length:1504 Species:Danio rerio


Alignment Length:1505 Identity:259/1505 - (17%)
Similarity:417/1505 - (27%) Gaps:696/1505 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LCR-KSRNLS---------EKKRRDQFNSLVNDLSALISTS-------SRKMDKSTVLKSTIAFL 62
            ||. :.|.||         :|:||:|.:..:.:|:.|||.:       :.|.||..:||.|:..:
Zfish    12 LCSDRKRKLSTCDTPGQGCDKRRREQESKYIEELAELISANLSDIDSFNVKPDKCAILKETVRQI 76

  Fly    63 KNHNEA---------TDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFSSMGSIFYASES 118
            :...|.         ..::.|....|    ..:..|....|:|::||||:.|.|..|||.:.|::
Zfish    77 RQIKEQGKSSCGDDDVQKADVSSTGQ----GVIDKDHLGPLLLQALDGFLFVVSREGSIVFVSDN 137

  Fly   119 ITSQLGYLPQDLYNMTIYDLAYEMDHE-------------------------------------- 145
            :|..|.|..::|.|.:||::.:|.|.|                                      
Zfish   138 VTQYLQYKQEELINTSIYNILHEEDREELHKNLPKSNGPNSVSWGGDSSRQKSHTFNCRMLVKFG 202

  Fly   146 ----------------------------------------------------------------- 145
                                                                             
Zfish   203 HGGPGGEEGAGGPRYETMQCFALTQPKAMMEEGEDLQSCMICVARRVTAVERTERFSTRHELSGK 267

  Fly   146 -------ALLNIFMNP------------------------------------------------- 154
                   :||:..|.|                                                 
Zfish   268 LIEIEQQSLLHTTMRPGWEDLVRRCMQMFLHRSEGQPWSYKRHYHEAYVHGRAETPPYRFSLSDG 332

  Fly   155 TPVIEPRQTDIS----SSNQITFY-THL----------RRGG-MEKVDANAYELVKFVGYFRNDT 203
            |||....::::.    :|:..||. |||          .:|| |..|..||            :.
Zfish   333 TPVTAQTRSELCRNPVTSDPHTFLSTHLLQREQNGYRPNQGGVMRSVMGNA------------NP 385

  Fly   204 NTSTGSSSEVSNGSNGQPAVLP----------RIFQQNPNAEVDKKLVFVGTGRVQNPQLIREMS 258
            |...|..:....|.|.|..:.|          |:.|.||..::::    :......|...:.:|:
Zfish   386 NAQMGMGNTRGYGMNEQGHMGPRGGAMYGPGNRMNQMNPMHQMNQ----MNQMNSMNQMNMNQMN 446

  Fly   259 IIDPTS-----NEFTSKHSMEWKFLFLDH------------------------------------ 282
            .::...     |:....:||..    :.|                                    
Zfish   447 CMNQMGSMNQMNQMNQMNSMNQ----MGHPGMNQHQQGQFHGGGGYGMVMTSPSQGSPGMNPGQQ 507

  Fly   283 --------RAPPIIGYMPFE------------VLGTSGY------DYYHFDDLDSIVACHEELRQ 321
                    |..|.:|..||.            :.|:||.      :.:....|:::.|..|    
Zfish   508 NLMGSPRIRGSPKMGASPFSPGGMHSPMGPVGMGGSSGSSGPSVGNTFSSSSLNALQAISE---- 568

  Fly   322 TGEGKSCYYRFLTKGQQWIWLQTDYYVSYHQFNSKPDYVVCTHKVVSYAEVLKDSRKEGQKS--G 384
             |.|.|              |.:......|:.:|.|:.               :|.:..|:.  |
Zfish   569 -GVGSS--------------LPSALNSPAHKSDSSPNI---------------NSTQSSQQGPIG 603

  Fly   385 NSNSITNNGSSKVIA-STGTSSKSASATTTLRDFELSSQNLDSTLLG----------------NS 432
            |:..||::..|...| |||...:.||:|.. .|...|..|.|.:..|                ..
Zfish   604 NNKPITSDSKSPSSAHSTGLDQQQASSTEN-TDKPDSQSNKDGSAGGEVNRRVPDGKGHKKLLQL 667

  Fly   433 LAS------LGTETAATSPAVDSSPMWSASAVQPSGSCQINPLKT---SRPASSYGN----ISST 484
            |.|      :||.|:...|...|:||  .|..:.:||..::|..|   |...||.||    .||.
Zfish   668 LTSPTEEIGIGTATSGPVPGRASTPM--GSDPKETGSGMMSPSSTGVSSSSGSSSGNNVNQQSSG 730

  Fly   485 GISPKA-------------KRK-CYFYNNRGNDSDSTSMSTDSVTSRQSMMTHVSSQSQRQRSHH 535
            |:|..|             |.| .:.....||..|..:..|...|.:.|:.:.......|.....
Zfish   731 GVSSTACPSGHHSTHTLQEKHKILHKLLQNGNTPDDVARITAEATGKSSLSSEHPGAEGRNLELK 795

  Fly   536 REHH--RENHHNQS--HHHMQQQQQHQ--------------------------------NQQ--- 561
            :|.|  :|....|:  |:.:.:....:                                ||:   
Zfish   796 QEQHSPKEGKKPQALLHYLLNKDDSKEPGATEVKPKLEELEARGASGGQGAGVTTSSSSNQESKV 860

  Fly   562 --QQHQQHQQLQQQL-------------------------------------------------- 574
              :|..:.:.|:..|                                                  
Zfish   861 KLEQPDELESLESILGGLRNPGPGMFVDSGSGGSEVGNKQGNGPNSTAHDREGVGMGSGQRVPFQ 925

  Fly   575 ----------------------------QHT------------VGTPKMVPLLPIASTQIMAGNA 599
                                        :||            :|.|...|:.........:|: 
Zfish   926 RAVSVDGKPMSGPGMTGRKSAPSSLVKQEHTDSQIGMGGPNRLMGMPNRPPMAGAGDWMSSSGS- 989

  Fly   600 CQFPQPAYPLASPQLVAPTFLEPPQYLTAIPM---------------QPV--IAPFPVA------ 641
                 ||..:..|.:..|.....|:.:...||               |.:  :.|:.|.      
Zfish   990 -----PAGSVGHPGMGRPGMDHNPKSMMGGPMVSRSNSVPATRSMLQQQLMEMGPYDVGMGMNSF 1049

  Fly   642 -----PVLSP-----------------LPVQSQTDMLPDTVVMTPTQSQLQDQLQRKHDELQKLI 684
                 |..||                 ||:.|..|.|    :..|:.|:.|...:...|:|..|:
Zfish  1050 RGQAPPPQSPSWPDSGMGMEGPPSANRLPINSPLDEL----LAPPSTSEGQSDERALLDQLDSLL 1110

  Fly   685 LQQQNELRIVSEQL--------LLS------------------------------RYTYLQ---- 707
               .|...|..|::        |::                              :..|.|    
Zfish  1111 ---NNTDVIALEEIDRALGIPDLINQGHSSDQPPPSDPFSGPCLGPDSSMGMEPPKAMYGQGYPG 1172

  Fly   708 -PMMSM--GFAPGNMTAAAVGNLGASGQRGLNFTGSNAVQPQFNQYG----------FALNSEQM 759
             |.|.|  |:.||....|..|.....||.|   .|.|.:..|.||.|          ....:..|
Zfish  1173 PPSMGMQGGYGPGPNPGAGPGPGPMQGQSG---PGFNPMMSQMNQQGGFPGMGGMGPMHPRANMM 1234

  Fly   760 LNQ--QDQQMMMQQQQNLHTQHQHNLQQQHQSHSQLQQHT----------------------QQQ 800
            .|:  |.:.:.:|.||.|  |.|..|.|..|:.......:                      ..|
Zfish  1235 RNRVPQAKPLRLQLQQRL--QGQQFLNQSRQAMGMRPDASPAGNPGMRPSMQPGMGGQPGFLNAQ 1297

  Fly   801 HQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQLQQQNDILLREDIDDIDAFLNLSPLHSLG 865
            ...|:.::....|.:.::|:.....|||||||||:                  |....||..::.
Zfish  1298 MMAQRSREMLNLQTEMRRQRMMMMMQQQQQQQQQV------------------AAGGFSPPPNVT 1344

  Fly   866 SQSTI-NPFNS--SSNNNNQSYNGGSNLNNGNQNNNN---RSSNPPQNNNEDSLLS--------- 915
            :.:.: ||...  .|....|::|.|.|...|.|.:.:   ..|:||.|     ::|         
Zfish  1345 APTGMDNPMAGPPMSQPGQQAFNYGGNYGIGQQGDPSFVGTGSSPPNN-----MMSGRMGGPQNP 1404

  Fly   916 CMQMATESSP 925
            .||...:|:|
Zfish  1405 MMQQHPQSNP 1414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClkNP_001014576.1 HLH 16..68 CDD:238036 18/68 (26%)
PAS 93..153 CDD:214512 24/169 (14%)
PAS 264..366 CDD:238075 22/168 (13%)
PAS_11 265..368 CDD:291273 22/164 (13%)
ncoa3XP_021335474.1 HLH 32..85 CDD:197674 15/52 (29%)
PAS 113..170 CDD:214512 22/56 (39%)
PAS_3 256..367 CDD:330807 13/110 (12%)
NCOA_u2 490..617 CDD:318802 25/160 (16%)
SRC-1 663..773 CDD:312390 30/111 (27%)
DUF4927 795..880 CDD:318508 10/84 (12%)
Nuc_rec_co-act 1094..1141 CDD:312376 8/49 (16%)
DUF1518 1348..1406 CDD:311422 14/62 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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