DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clk and cyc

DIOPT Version :10

Sequence 1:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster


Alignment Length:413 Identity:106/413 - (25%)
Similarity:196/413 - (47%) Gaps:64/413 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DDESDDKDDTKSFLCRKSRNLS--EKKRRDQFNSLVNDLSALIS---TSSRKMDKSTVLKSTIAF 61
            |:..|::...::....:.:|.|  ||:|||:.|:.:|:||::|.   ...||:||.|||:..:..
  Fly    15 DENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQH 79

  Fly    62 LKNHNEATDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFS-SMGSIFYASESITSQLGY 125
            |:. ...:.....|. ..|::|:|||:.|...::|::.:||:.|.. ..|.|.|.|:|::|.|..
  Fly    80 LRG-IRGSGSLHPFN-GSDYRPSFLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNS 142

  Fly   126 LPQDLYNMTIYDLAYEMD----HEALLNIFMNP------TPVIEPRQTDISSS-------NQITF 173
            ...||...:.:|:.:..|    .|.|.::...|      ...:.|.:||:..|       .:.:|
  Fly   143 TQADLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSF 207

  Fly   174 YTHLRRGGMEKVDANAYELVKFVGYFRNDTNTSTGSSSEVSNGSNGQPAVLPRIFQ--------- 229
            :..::.    :..:|        ...:.:::||:.|.|.....|........|:.|         
  Fly   208 FCRMKL----RTASN--------NQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWT 260

  Fly   230 ----QNPNAEVDKKLV----FVGTGRVQNPQLIREMSIIDPTSNE-------FTSKHSMEWKFLF 279
                ::.:|:.|::..    .|..||:  |..:|..::.....|.       |.|:||.|.||||
  Fly   261 PIKDEDQDADSDEQTTNLSCLVAIGRI--PPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLF 323

  Fly   280 LDHRAPPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEELRQTGEGKSC-YYRFLTKGQQWIWLQ 343
            :|.||..:||::|.|:||||.|:|:|.:|:.:::..|:.:.|..|..:. .|||..|...:|.||
  Fly   324 IDQRATLVIGFLPQEILGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQ 388

  Fly   344 TDYYVSYHQFNSKPDYVVCTHKV 366
            :::....:.:.|:.||::..:.|
  Fly   389 SEWRAFKNPWTSEIDYIIAKNSV 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClkNP_001014576.1 bHLH-PAS_dCLOCK 11..86 CDD:381578 23/79 (29%)
PAS 93..153 CDD:214512 17/64 (27%)
PAS_11 265..368 CDD:464214 39/110 (35%)
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 20/61 (33%)
PAS 111..173 CDD:214512 17/61 (28%)
PAS_11 311..411 CDD:464214 37/99 (37%)

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