DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clk and npas2

DIOPT Version :9

Sequence 1:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_840084.1 Gene:npas2 / 352934 ZFINID:ZDB-GENE-030408-3 Length:845 Species:Danio rerio


Alignment Length:1045 Identity:314/1045 - (30%)
Similarity:462/1045 - (44%) Gaps:278/1045 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDD--ESDDKDDTKSFLCRKSRNLSEKKRRDQFNSLVNDLSALISTSS--RKMDKSTVLKSTIAF 61
            :||  :.|:||..|    |.|||.||||||||||.|:.:|..::....  |||||||:|:.||.|
Zfish    30 VDDLMDEDEKDRAK----RASRNKSEKKRRDQFNVLIKELCTMLQGQGHPRKMDKSTILQRTIDF 90

  Fly    62 LKNHNEATDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFSSMGSIFYASESITSQLGYL 126
            |:...|.|.:::..|::|||||:||||:|:|.||||:||||::..::.|:|.|.|:|::|.:|:|
Zfish    91 LQKQKEITAQTESCEVRQDWKPSFLSNEEFTQLMLEALDGFLIALTTDGNIIYVSDSVSSLIGHL 155

  Fly   127 PQDLYNMTIYDLAYEMDHEALLNIFMNPTPVIEPRQTDISSSNQ--ITFYTHLRRGGMEKVDANA 189
            |.|:.:..|.:...|.:|..:..:..:...:.|....|:.:||:  :.|..|:.||.::..:...
Zfish   156 PSDMVDQNILNFLPEREHADVYKLLSSHMLLTESSTVDLLNSNETHVEFCCHIARGNIDPKEPPT 220

  Fly   190 YELVKFVGYFRNDTNTSTGSSSEVSNGSNGQPAVLPRIFQQNPNAEVDKKLVFVGTGRVQNPQLI 254
            ||.|||||.|:...|....|       .||.....||..|    :.:::::..|.|.|:..||.:
Zfish   221 YEYVKFVGDFKFHNNVPLSS-------CNGYDLAFPRTLQ----SSIEEQVCLVATVRLATPQFL 274

  Fly   255 REMSIIDPTSNEFTSKHSMEWKFLFLDHRAPPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEEL 319
            :::..::...:||||:||:|||||||||||.|||||:||||||||||||||.|||:.|..||::|
Zfish   275 KDLCNVEDVCDEFTSRHSLEWKFLFLDHRASPIIGYLPFEVLGTSGYDYYHVDDLELIAQCHKQL 339

  Fly   320 RQTGEGKSCYYRFLTKGQQWIWLQTDYYVSYHQFNSKPDYVVCTHKVVSYAEVLKDSRKE-GQKS 383
            .|.|:||||||||||||||||||||.||::|||:||||:::||||.|||||||..:.|:| |.:.
Zfish   340 MQCGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYAEVRAERRREFGLEE 404

  Fly   384 GNSNSITNNGSSKVI------ASTGTSSKSASATTTLRDFELSSQNLDSTLLGNSLASLGTETAA 442
            .:|:..|::...:.:      ....|..:..||.:      :|||:          :...:.||.
Zfish   405 SSSDMATSSIKGQEVFLDMCPPLEATRDRINSARS------VSSQS----------SRKSSHTAL 453

  Fly   443 TSPAVDSSPMWSASAVQPSGSCQINPLKTSRPASSYGNISSTGISPKAKRKCYFYNNRGNDSDST 507
            :..|.:||..::.:......|..|.|.|:|      ..::.||.....:|:        :.|:..
Zfish   454 SDSASNSSVRYTEACTSSRQSASIGPEKSS------NRMTHTGTKTLIQRQ--------SSSEPP 504

  Fly   508 SMSTDSVTSRQSMMTHVSSQSQRQRSHHREHHRENHHNQSHHHMQQQQ---QHQNQQQQHQQHQQ 569
            |:|..  .|:.|.||                       ||.:..||.|   .||.::|..::.:.
Zfish   505 SLSPS--CSQHSAMT-----------------------QSLYSFQQPQLGVMHQLKEQLEERTRI 544

  Fly   570 L------QQQLQHTVGTPKMVPLLPIASTQIMAGNACQFP-QPAYPLASPQLVAPTFLEPPQYLT 627
            |      |||..|.:...     |.:|:.|::    .|.| |..:..:.||...|          
Zfish   545 LQADIKTQQQELHDIKEK-----LQLANLQML----LQQPIQGEFAGSGPQQQGP---------- 590

  Fly   628 AIPMQPVIAPFPVAPVLSPLPVQSQTDMLPDTVV------MTPTQSQLQDQLQRKHDELQKLILQ 686
                              ..|.|..|...|...|      :.|..|..|.|        |:|:  
Zfish   591 ------------------GRPAQQNTHPKPQHCVSHSSHTLQPNSSSTQGQ--------QRLV-- 627

  Fly   687 QQNELRIVSEQL----LLSRYTYLQPMMSMGFAPGNMTAAAVGNLGASGQRGLNFTGSNAVQPQF 747
            |...::.||..:    .|:...|..|||   |:|.:            |.|.             
Zfish   628 QAGHMQAVSVPMQTHTSLTTPFYSNPMM---FSPNH------------GHRS------------- 664

  Fly   748 NQYGFALNSEQMLNQQDQQMMMQQQQNLHTQHQHNLQQQHQSHSQLQQHTQQQ---HQQQQQQQQ 809
                                            ||:...|..:|:...|..|.:   :|..|...|
Zfish   665 --------------------------------QHDTHCQRNTHADYSQDGQLRMLLNQPMQTLVQ 697

  Fly   810 QQQQQQQQQQ-----QQQQQQQQQQQQQQQLQLQQQNDILLREDIDDIDAFLNLSPLHSLGSQST 869
            ......|..|     ||.:...:||.......:||.|          .:|.|..||:.   :...
Zfish   698 DSNGGPQSSQCTSTIQQTKYPLEQQMMAPSFPVQQVN----------CNAVLVPSPVF---TSPI 749

  Fly   870 INPFNSSSNNNNQSYNGGSNLNNGNQNNNNRSSNPPQNNNEDSL-LSCMQMATESSPSINFHMGI 933
            :.|.||...               :|.....:::||...:  || |...|...:..|....|   
Zfish   750 MIPHNSFIT---------------HQTTPTYTTHPPVAPH--SLPLQQPQQFFQMQPQGLIH--- 794

  Fly   934 SDDGSETQSEDNKMMHT------SGSNLVQQQQQQQQQQQILQQHQQQSNSFFSSNPFLNSQNQN 992
               |:.||:    :.||      |....||.||||||||   ..|..||.:.          :..
Zfish   795 ---GTPTQA----LFHTPSVPQQSTVGYVQPQQQQQQQQ---HHHHSQSGNL----------SDY 839

  Fly   993 QNQLP 997
            :|.||
Zfish   840 RNMLP 844

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClkNP_001014576.1 HLH 16..68 CDD:238036 28/53 (53%)
PAS 93..153 CDD:214512 21/59 (36%)
PAS 264..366 CDD:238075 78/101 (77%)
PAS_11 265..368 CDD:291273 79/102 (77%)
npas2NP_840084.1 HLH 40..96 CDD:238036 30/59 (51%)
PAS 119..>203 CDD:307226 27/83 (33%)
PAS_3 285..388 CDD:330807 79/102 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577648
Domainoid 1 1.000 198 1.000 Domainoid score I3029
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 446 1.000 Inparanoid score I1606
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002532
OrthoInspector 1 1.000 - - otm24250
orthoMCL 1 0.900 - - OOG6_105251
Panther 1 1.100 - - LDO PTHR46055
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4514
SonicParanoid 1 1.000 - - X1900
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.780

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