DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Clk and Arntl

DIOPT Version :9

Sequence 1:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster
Sequence 2:XP_017444554.1 Gene:Arntl / 29657 RGDID:62003 Length:633 Species:Rattus norvegicus


Alignment Length:608 Identity:152/608 - (25%)
Similarity:244/608 - (40%) Gaps:166/608 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DKDDTKSFL-----------CRKSRNLSEKKRRDQFNSLVNDLSALIST---SSRKMDKSTVLKS 57
            ||||....|           .|::.:..||:|||:.||.:::|::|:.|   .|||:||.|||:.
  Rat    60 DKDDPHGRLEYAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRM 124

  Fly    58 TIAFLKNHNEATDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFS-SMGSIFYASESITS 121
            .:..:|....||:.    ..:.::||.|||:||..||:|.:.|||:.|.. ..|.|.:.|||:..
  Rat   125 AVQHMKTLRGATNP----YTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFK 185

  Fly   122 QLGYLPQDLYNMTIYDLAYEMD---------------HEALLNIFMNPTPV---IEPRQTDISSS 168
            .|.|...||...:::|..:..|               .|.|::. ....||   |.|..:.:.|.
  Rat   186 ILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDA-KTGLPVKTDITPGPSRLCSG 249

  Fly   169 NQITFYTHLRRG---------------GMEKVDANAYELVKFVGYFRNDTNTSTGSSSEVSNGSN 218
            .:.:|:..::..               ..:|.|..::..:...||.::...|..|...:      
  Rat   250 ARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDED------ 308

  Fly   219 GQPAVLPRIFQQNPNAEVDKKLVFVGTGRVQN---PQLIR-EMSIIDPTSNEFTSKHSMEWKFLF 279
                       ..|:.|.......|..||:.:   ||.:. |:.:   .|.|:.|:|:::.||:|
  Rat   309 -----------SEPDNEGCNLSCLVAIGRLHSHMVPQPVNGEIRV---KSMEYVSRHAIDGKFVF 359

  Fly   280 LDHRAPPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEELRQTGE--GKSCYYRFLTKGQQWIWL 342
            :|.||..|:.|:|.|:||||.|:|:|.||:..:..||.::.||.|  ..:| |:|..|...:|.|
  Rat   360 VDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNC-YKFKIKDGSFITL 423

  Fly   343 QTDYYVSYHQFNSKPDYVVCTHKVVSYAEVLKDSRKEGQKSGNSNSITNNGSSKVIASTGTSSKS 407
            ::.::...:.:..:.:|:|.|:.|| .|.||     ||                           
  Rat   424 RSRWFSFMNPWTKEVEYIVSTNTVV-LANVL-----EG--------------------------- 455

  Fly   408 ASATTTLRDFELSSQNLDSTLLGNSLASLGTETAATSPAVDSSPMWSASAV-------------- 458
              ...|......|..::||.|.......  ..|..|.|.:.......|..:              
  Rat   456 --GDPTFPQLTASPHSMDSMLPSGEGGP--KRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRI 516

  Fly   459 ---QPSGSCQINPLK-TSRP---ASSYG----------NISSTGISPKAKRKC--YFYNNRG--- 501
               .|| ||..:||. ||.|   |||.|          :|.|.|:.|...::.  |.|::..   
  Rat   517 RGSSPS-SCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSAGLLPGQAQETPGYPYSDSSSIL 580

  Fly   502 ------------NDSDSTSMSTD 512
                        ||..|:|.|.|
  Rat   581 GENPHIGIDMIDNDQGSSSPSND 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClkNP_001014576.1 HLH 16..68 CDD:238036 20/54 (37%)
PAS 93..153 CDD:214512 20/75 (27%)
PAS 264..366 CDD:238075 37/103 (36%)
PAS_11 265..368 CDD:291273 37/104 (36%)
ArntlXP_017444554.1 bHLH-PAS_ARNTL_PASD3 74..137 CDD:381444 21/62 (34%)
PAS 156..215 CDD:214512 18/58 (31%)
PAS_11 346..448 CDD:405306 36/102 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3561
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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