DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clk and LOC1272221

DIOPT Version :10

Sequence 1:NP_001014576.1 Gene:Clk / 38872 FlyBaseID:FBgn0023076 Length:1027 Species:Drosophila melanogaster
Sequence 2:XP_061505174.1 Gene:LOC1272221 / 1272221 VectorBaseID:AGAMI1_001659 Length:627 Species:Anopheles gambiae


Alignment Length:31 Identity:12/31 - (38%)
Similarity:17/31 - (54%) Gaps:5/31 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LEQLSEEKTL---EGLPRVTNAKVNEYYEKI 70
            |:..|..|||   ..||..|:  |.:|:||:
Mosquito     3 LQISSAAKTLLHKFALPAATS--VAQYHEKV 31

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClkNP_001014576.1 bHLH-PAS_dCLOCK 11..86 CDD:381578 12/31 (39%)
PAS 93..153 CDD:214512
PAS_11 265..368 CDD:464214
LOC1272221XP_061505174.1 None
Blue background indicates that the domain is not in the aligned region.

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