DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hn and pah

DIOPT Version :9

Sequence 1:NP_001261542.1 Gene:Hn / 38871 FlyBaseID:FBgn0001208 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001027484.1 Gene:pah / 613076 XenbaseID:XB-GENE-991085 Length:445 Species:Xenopus tropicalis


Alignment Length:440 Identity:289/440 - (65%)
Similarity:349/440 - (79%) Gaps:17/440 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 YIVEGVDIKEARN-TCLLFSPKDSSLSSGALANILAIFKKHDINLVHIESR-SSLRVPGYEFFVE 81
            |.|.|::..:..| ..|:||.|:   ..||||.:|.||::.||:|.||||| |.|....|:||:.
 Frog    14 YEVNGIENNQEDNRISLIFSLKE---EVGALAKVLRIFEEKDISLTHIESRPSRLNKDEYQFFIN 75

  Fly    82 ADGKSGALGKAIEDVKEQCSYFNI------ISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSE 140
            .|.||   ..|::|: ..|...:|      :||:.:.:  |||||||.|:|||:|||||||||:|
 Frog    76 LDDKS---THALDDI-ISCLRNDIGATVHELSRNKRKD--AVPWFPRTIQDLDKFANQILSYGAE 134

  Fly   141 LDADHPGFTDPEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTHACREY 205
            |||||||||||.||..||.|||||||||||:|:|||.||.:|.:|||.:||.|..||.||||.|:
 Frog   135 LDADHPGFTDPVYRALRKEFADIAYNYKHGQPIPHVTYTDQEKKTWGTVFRELKTLYPTHACYEH 199

  Fly   206 NHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRH 270
            |||||||.:.||:.|:||||||||||||:.||||.||||||||||||||||||||||||||||||
 Frog   200 NHVFPLLEEYCGYNENNIPQLEDVSNFLQKCTGFRLRPVAGLLSSRDFLAGLAFRVFHSTQYIRH 264

  Fly   271 PSKPMYTPEPDVCHELMGHVPLFADPAFAQFSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQ 335
            .|||||||||||||||:||.||||||.|||||||||||||||||:|||.|:|::|||:|:|:|:|
 Frog   265 WSKPMYTPEPDVCHELLGHAPLFADPGFAQFSQEIGLASLGAPDEYIEMLATVYWFTIEFGICKQ 329

  Fly   336 EGELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIK 400
            :|:|||||||||||:|||:|||||||:.|.||||.|.:.|||||:|||:|::|:|||.||||..|
 Frog   330 DGKLKAYGAGLLSSFGELQYCLTDKPEFKPFEPEKTALQKYPITEFQPIYFIAESFEEAKEKIRK 394

  Fly   401 FANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKL 450
            ||.:|||||.||||.||||:||||:..|:.||.::||||..||.:|:.||
 Frog   395 FATTIPRPFSVRYNPYTQSIEVLDNIQQLKNLAESINSEIGILCSALKKL 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnNP_001261542.1 Phe4hydrox_tetr 15..451 CDD:130335 289/440 (66%)
ACT_AAAH 32..107 CDD:153176 31/81 (38%)
Biopterin_H 118..447 CDD:278766 247/328 (75%)
pahNP_001027484.1 Phe4hydrox_tetr 22..445 CDD:130335 286/432 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H234
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3415
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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