DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hn and th2

DIOPT Version :9

Sequence 1:NP_001261542.1 Gene:Hn / 38871 FlyBaseID:FBgn0001208 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_005164791.1 Gene:th2 / 414844 ZFINID:ZDB-GENE-050201-1 Length:473 Species:Danio rerio


Alignment Length:445 Identity:213/445 - (47%)
Similarity:288/445 - (64%) Gaps:15/445 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PTRVEDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALANILAIFKKHDINLVHIESRS---SLR 72
            |:|..||....|....|...|  :||:.|:...:....|.  .:|:..:..|:|:|||:   |.|
Zfish    36 PSRCGDSFVFEEEKTGKITLN--ILFALKNEKNAGFFKAG--KVFETFETKLLHLESRASRKSKR 96

  Fly    73 VPG--YEFFVEADGKSGALGKAIEDVKEQCSYFNIISRDYKDNATAVPWFPRRIRDLDRFANQIL 135
            ..|  .|||:..:.........|..:|.......|:..:      ..||||::|.|||...:.|.
Zfish    97 SSGEDLEFFMRCEVHCSDTDIFINSLKRVADDVRIVQEE------KTPWFPKKISDLDTCNHLIT 155

  Fly   136 SYGSELDADHPGFTDPEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTH 200
            .|..:||.|||||:|.||||||.:.:::|:|||||:|||.|:||.||..||..::|.|..||.:|
Zfish   156 KYDPDLDQDHPGFSDSEYRKRRGFISEMAFNYKHGDPLPVVEYTPEENATWREVYRTLRSLYPSH 220

  Fly   201 ACREYNHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHST 265
            |||::......|.....:.||.||||.:||.||::.|||.|||||||||:|||||.||||||..|
Zfish   221 ACRQFLEALTQLESERLYGEDQIPQLREVSAFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCT 285

  Fly   266 QYIRHPSKPMYTPEPDVCHELMGHVPLFADPAFAQFSQEIGLASLGAPDDYIEKLSTIFWFTVEY 330
            |||||||.||::||||.||||:||:|:.||..||||||||||.||||.|:.||||||::|||||:
Zfish   286 QYIRHPSAPMHSPEPDCCHELLGHIPMLADQEFAQFSQEIGLVSLGASDEDIEKLSTLYWFTVEF 350

  Fly   331 GVCRQEGELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAK 395
            |:|:|.|.:||||||||||||||.|.|:::||.|.|:|..|.|..|....:||:|:|::|||.||
Zfish   351 GLCKQNGAVKAYGAGLLSSYGELLYALSNEPQYKPFDPAETAVQPYQDQSYQPVYFVSESFEDAK 415

  Fly   396 EKTIKFANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKL 450
            :|..:::::|..||.:||:.||.|:||||...:|.|.:..:..:.:||..|:.:|
Zfish   416 QKLRRYSSTIQTPFSIRYDPYTCSMEVLDEPSKIQNALGQMRDDLKILHKALGRL 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnNP_001261542.1 Phe4hydrox_tetr 15..451 CDD:130335 211/441 (48%)
ACT_AAAH 32..107 CDD:153176 19/79 (24%)
Biopterin_H 118..447 CDD:278766 185/328 (56%)
th2XP_005164791.1 Tyr_3_monoox 16..470 CDD:130336 212/443 (48%)
ACT_TH 16..133 CDD:153202 26/100 (26%)
Biopterin_H 138..467 CDD:278766 185/328 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3186
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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