DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hn and Pah

DIOPT Version :9

Sequence 1:NP_001261542.1 Gene:Hn / 38871 FlyBaseID:FBgn0001208 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_036751.2 Gene:Pah / 24616 RGDID:3248 Length:453 Species:Rattus norvegicus


Alignment Length:440 Identity:278/440 - (63%)
Similarity:340/440 - (77%) Gaps:10/440 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALANILAIFKKHDINLVHIESR-SSLRVPGYEF 78
            ::::||.:..:...|  ..|:||.|:   ..||||.:|.:|:::||||.||||| |.|....|||
  Rat    20 QETSYIEDNSNQNGA--ISLIFSLKE---EVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEF 79

  Fly    79 FVEADGKS-GALGKAIEDVKEQC-SYFNIISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSEL 141
            |...|.:| ..||..|:.::... :..:.:|||.:.|  .||||||.|::||||||||||||:||
  Rat    80 FTYLDKRSKPVLGSIIKSLRNDIGATVHELSRDKEKN--TVPWFPRTIQELDRFANQILSYGAEL 142

  Fly   142 DADHPGFTDPEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTHACREYN 206
            |||||||.||.||.|||.||||||||:||:|:|.|:||:||.:|||.:||.|..|||||||.|:|
  Rat   143 DADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEEKQTWGTVFRTLKALYKTHACYEHN 207

  Fly   207 HVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHP 271
            |:||||...|||||||||||||||.||:.||||.||||||||||||||.||||||||.||||||.
  Rat   208 HIFPLLEKYCGFREDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHG 272

  Fly   272 SKPMYTPEPDVCHELMGHVPLFADPAFAQFSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQE 336
            ||||||||||:||||:||||||:|.:|||||||||||||||||:|||||:||:|||||:|:|::.
  Rat   273 SKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKEG 337

  Fly   337 GELKAYGAGLLSSYGELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIKF 401
            ..:||||||||||:|||:|||:|||:|...|.|.....:|.:|:||||||||:||..||||...|
  Rat   338 DSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKIACQEYSVTEFQPLYYVAESFSDAKEKVRTF 402

  Fly   402 ANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKLR 451
            |.:|||||.|||:.|||.|||||:..|:..|.|:||||..||.||:.|::
  Rat   403 AATIPRPFSVRYDPYTQRVEVLDNTQQLKILADSINSEVGILCNALQKIK 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnNP_001261542.1 Phe4hydrox_tetr 15..451 CDD:130335 278/438 (63%)
ACT_AAAH 32..107 CDD:153176 30/77 (39%)
Biopterin_H 118..447 CDD:278766 238/328 (73%)
PahNP_036751.2 Phe4hydrox_tetr 20..452 CDD:130335 278/438 (63%)
ACT_PAH 21..110 CDD:153203 33/93 (35%)
Biopterin_H 119..449 CDD:278766 239/329 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341388
Domainoid 1 1.000 514 1.000 Domainoid score I305
eggNOG 1 0.900 - - E1_COG3186
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H234
Inparanoid 1 1.050 555 1.000 Inparanoid score I1074
OMA 1 1.010 - - QHG54212
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 1 1.000 - - oto96368
orthoMCL 1 0.900 - - OOG6_100921
Panther 1 1.100 - - LDO PTHR11473
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6360
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.760

Return to query results.
Submit another query.