DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hn and tph-1

DIOPT Version :9

Sequence 1:NP_001261542.1 Gene:Hn / 38871 FlyBaseID:FBgn0001208 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_495584.4 Gene:tph-1 / 174227 WormBaseID:WBGene00006600 Length:532 Species:Caenorhabditis elegans


Alignment Length:478 Identity:204/478 - (42%)
Similarity:278/478 - (58%) Gaps:56/478 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PTR-VEDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALANILAIFKKHDINLVHIESRSSLRVP 74
            ||| |...|.|.||   .|.....:|.....||..|..::.::|....| ..:.|:|:|.|    
 Worm    66 PTRTVRREASIREG---DEEEGVQILTIIVKSSRVSEDISKMIANLPDH-TRIKHLETRDS---- 122

  Fly    75 GYEFFVEADGKSGALGKAIE--------------------DVKEQCSYF--NIISRDY-----KD 112
                   .||.|..:...:|                    ||.|..|..  ..|...|     .|
 Worm   123 -------QDGSSKTMDVLLEIELFHYGKQEAMDLMRLNGLDVHEVSSTIRPTAIKEQYTEPGSDD 180

  Fly   113 NATAVPWFPRRIRDLDRFANQILSYGSELDADHPGFTDPEYRKRRKYFADIAYNYKHGEPLPHVD 177
            ..|...|||:.|.|||..|.:::.||:.||||||||.|.|||:||..||::|.|||||||:|..:
 Worm   181 ATTGSEWFPKSIYDLDICAKRVIMYGAGLDADHPGFKDTEYRQRRMMFAELALNYKHGEPIPRTE 245

  Fly   178 YTKEEIETWGIIFRNLTKLYKTHACREYNHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLR 242
            ||..|.:|||||:|.|.:|:|.|||:::...|.||..:||:.|:|||||||:..||:..|||.:|
 Worm   246 YTSSERKTWGIIYRKLRELHKKHACKQFLDNFELLERHCGYSENNIPQLEDICKFLKAKTGFRVR 310

  Fly   243 PVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGHVPLFADPAFAQFSQEIGL 307
            ||||.||:||||||||:|||..|||:||.:.|.||||||..||||||:.|||||.||||||||||
 Worm   311 PVAGYLSARDFLAGLAYRVFFCTQYVRHHADPFYTPEPDTVHELMGHMALFADPDFAQFSQEIGL 375

  Fly   308 ASLGAPDDYIEKLSTIFWFTVEYGVCRQEG-------------ELKAYGAGLLSSYGELEYCLTD 359
            |||||.::.::||:|:::|::|:|:...:.             ..|.||||||||.|||::.:..
 Worm   376 ASLGASEEDLKKLATLYFFSIEFGLSSDDAADSPVKENGSNHERFKVYGAGLLSSAGELQHAVEG 440

  Fly   360 KPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIKFANSIPRPFGVRYNAYTQSVEVLD 424
            ...:..|:|:.....:..||.||..|:...:||.|::|...|.|::.|||.||||.||:|||||:
 Worm   441 SATIIRFDPDRVVEQECLITTFQSAYFYTRNFEEAQQKLRMFTNNMKRPFIVRYNPYTESVEVLN 505

  Fly   425 SKPQISNLMDNINSEFQILQNAV 447
            :...|...::::.|:..:|..|:
 Worm   506 NSRSIMLAVNSLRSDINLLAGAL 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnNP_001261542.1 Phe4hydrox_tetr 15..451 CDD:130335 200/473 (42%)
ACT_AAAH 32..107 CDD:153176 18/96 (19%)
Biopterin_H 118..447 CDD:278766 172/341 (50%)
tph-1NP_495584.4 Trp_5_monoox 57..532 CDD:130337 204/478 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2400
OMA 1 1.010 - - QHG54212
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100921
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.770

Return to query results.
Submit another query.