DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hn and th

DIOPT Version :9

Sequence 1:NP_001261542.1 Gene:Hn / 38871 FlyBaseID:FBgn0001208 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_031756384.1 Gene:th / 100488900 XenbaseID:XB-GENE-992305 Length:491 Species:Xenopus tropicalis


Alignment Length:421 Identity:214/421 - (50%)
Similarity:289/421 - (68%) Gaps:12/421 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LLFSPKDSSLSSGALANILAIFKKHDINLVHIESRSSLRVPG----YEFFVEADGKSGALGKAIE 94
            ||||.|.|..||  |:..|.:|:..:..:.|:|:|...|..|    .|:||..:.....|...:.
 Frog    78 LLFSLKGSKPSS--LSRTLKVFETFEAKIQHLETRPGRRSVGTAGELEYFVRCEVHHSDLSTLMS 140

  Fly    95 DVKEQCSYFNIISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSELDADHPGFTDPEYRKRRKY 159
            .|:..|........|      .|.|||.:|.|||:..:.:..:..:||.:||||:|.|||||||.
 Frog   141 SVRRVCEDVRSTRED------KVHWFPTKIADLDKCHHLVTKFDPDLDLEHPGFSDQEYRKRRKM 199

  Fly   160 FADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTHACREYNHVFPLLVDNCGFREDNIP 224
            .||||:||:||:|:|.|:|..|||.||..::..|..||.||||:|:...|.||..:||:.|||||
 Frog   200 IADIAFNYRHGDPIPRVEYLPEEIATWKEVYSTLRSLYPTHACKEHLEAFQLLEAHCGYSEDNIP 264

  Fly   225 QLEDVSNFLRDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGH 289
            ||:|||:||::.:||||||||||||:|||||.||||||..||||||.|.||::||||.||||:||
 Frog   265 QLQDVSSFLKEKSGFTLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGH 329

  Fly   290 VPLFADPAFAQFSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQEGELKAYGAGLLSSYGELE 354
            ||:.||..||||||:||||||||.|:.||||:|::|||||:|:|:||||:||||||||||:|||.
 Frog   330 VPILADRTFAQFSQDIGLASLGATDEEIEKLATLYWFTVEFGLCKQEGEIKAYGAGLLSSFGELL 394

  Fly   355 YCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIKFANSIPRPFGVRYNAYTQS 419
            :.|:|:|:::.|.|:...|..|....:|.:|::::||..||||...:|:.|.|||.||::.||.|
 Frog   395 HALSDEPEVRPFNPDDAAVQPYQDQNYQSVYFISESFPDAKEKLRVYASHIKRPFAVRFDPYTDS 459

  Fly   420 VEVLDSKPQISNLMDNINSEFQILQNAVAKL 450
            :|||:|..:|.:.:|.:..|.|.|.||::.|
 Frog   460 IEVLNSAGRIQSSLDGLRDELQTLSNALSTL 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnNP_001261542.1 Phe4hydrox_tetr 15..451 CDD:130335 214/421 (51%)
ACT_AAAH 32..107 CDD:153176 22/76 (29%)
Biopterin_H 118..447 CDD:278766 188/328 (57%)
thXP_031756384.1 TOH_N 2..26 CDD:403668
ACT_TH 38..153 CDD:153202 22/76 (29%)
Biopterin_H 158..488 CDD:395280 189/329 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000587
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.