DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snmp2 and cd36l

DIOPT Version :10

Sequence 1:NP_001163372.1 Gene:Snmp2 / 38868 FlyBaseID:FBgn0035815 Length:556 Species:Drosophila melanogaster
Sequence 2:XP_002933143.3 Gene:cd36l / 100496002 XenbaseID:XB-GENE-5870091 Length:483 Species:Xenopus tropicalis


Alignment Length:543 Identity:137/543 - (25%)
Similarity:224/543 - (41%) Gaps:96/543 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WSLIVSALGVCVAVLGGYCGWILFP--NMV-HKKVEQSVVIQDGSEQFKRFVNLPQPLNFKVYIF 65
            |.:..:.:|...||:    |.:|||  |:: |:.|.::.||::|:..|..:|....|:....:|:
 Frog    13 WLIAGTVIGGLFAVV----GIVLFPVNNILNHEAVTKTSVIEEGTAAFDNWVLPRSPVYRSFWIY 73

  Fly    66 NVTNSDRIQQGAIPIVEEIGPYVYKQFRQKKVKHFSRDGSKISYVQNVHFDFDAVASAPYTQDDR 130
            :|.|.:.|..|..|.:::.|||.|...|..|:.....:...:||:|.....|....|....:|..
 Frog    74 HVRNPNDIINGGKPELQQKGPYTYLVRRIPKLGITQHENFTMSYLQYNDAIFQRHMSVGSEEDTH 138

  Fly   131 IVALNMHMNAFLQVFEREITDIFQGFANRLNSRLNQTPGVRVLKRLMERIRGKRKSVLQISENDP 195
            .|         |.|......|:|..:...||:                                 
 Frog   139 TV---------LNVAVASTPDMFPDYHEMLNT--------------------------------- 161

  Fly   196 GLALLLVHLNANLKAVFNDPRSMFVSTSVREYLFDGVRFCINPQGIAKAICNQIKESGSKTIREK 260
                          |:.|...|:|...:|:|.|:          |.......||         ..
 Frog   162 --------------AITNSSSSLFQVRTVKELLW----------GYNDPFLEQI---------PF 193

  Fly   261 SDGSLAFSFFGHKNGSGHEVYEVHTGKGDPMRVLEIQKLDDSHNLQVWLNASSEGETSVCNQING 325
            .|.......|...||:....|.|:.||.|..:|..|::.....:|..|     .|:.  ||.|||
 Frog   194 PDIDTTTGVFYPYNGTLDGPYNVYNGKDDISKVAVIERYKGERSLSYW-----NGDN--CNMING 251

  Fly   326 TDASAYPPFRQRGDSMYIFSADICRSVQLFYQTDIQYQGIPGYRYSIGENFINDIGPEHDNECFC 390
            |||..:.||.::.:.::.||.|.|||:...::.:...:||...|:.:.:..........||.|||
 Frog   252 TDAFLFSPFNKKKNHLFFFSPDACRSLYGVFEKEYDLKGIKMNRFVVPKEVFASSAENSDNHCFC 316

  Fly   391 VDKLANVIKRKNGCLYAGALDLTTCLD-APVILTLPHMLGASNEYRKMIRGLKPDAKKHQTFVDV 454
            .|     :|....|...|.|:|..|.| .|:.|:|||.|..|......:.||||:..:|::::||
 Frog   317 KD-----MKVTRNCTADGILELRACRDRKPIFLSLPHFLYGSQFLLDAVGGLKPNEYEHRSYIDV 376

  Fly   455 QSLTGTPLQGGKRVQFNMFLKSINRIGITENLPT-VLMPAIWVEEGIQLNGEMVAFFKKKLINTL 518
            :.:||..|...||:|.|:..:..|:|.:...|.: .:.|.:|:.|...:..:....||..:||.:
 Frog   377 EPVTGNALHYAKRLQINVMFQQTNKIDVMSKLQSGFVFPVLWLNETSLITDDAAKDFKAIVINPM 441

  Fly   519 KTLNIVHWATLCGGIGVAVACLI 541
            :|:.||....:|.|..:.:||.|
 Frog   442 RTIEIVAIQFVCVGCIMFLACSI 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snmp2NP_001163372.1 CD36 10..543 CDD:460076 136/537 (25%)
cd36lXP_002933143.3 CD36 19..464 CDD:460076 135/535 (25%)

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