DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcad and ACADVL

DIOPT Version :9

Sequence 1:NP_648149.1 Gene:Mcad / 38864 FlyBaseID:FBgn0035811 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001257376.1 Gene:ACADVL / 37 HGNCID:92 Length:678 Species:Homo sapiens


Alignment Length:429 Identity:143/429 - (33%)
Similarity:220/429 - (51%) Gaps:44/429 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SQSRAYAAVSHVSP---NGTSFA-------LTEDQL-----QLQELARKFTREEIIPVAAQYDKS 66
            |.|....|::...|   ...|||       ||.||:     .|.|...:|.:|.:.||:..:::.
Human    75 SDSHPSDALTRKKPAKAESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEV 139

  Fly    67 G------------EYPWPIIKKAWELGLMNNHIPADIGGLDLDVFTTCLSAEELAYGCTGIMTAL 119
            .            |..|..:|   |||.....:|:::||:.|.........|.:.....|:...|
Human   140 NDPAKNDALEMVEETTWQGLK---ELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITL 201

  Fly   120 EA-SGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKK--GDEWVI 181
            .| ..:|...::|.|.|.||:|||.:|.....|||:|:|||.:|||.:.|:|.|...  |..:.:
Human   202 GAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTL 266

  Fly   182 NGQKMWITNGGVANWYFVLARTNPDPKCPPS-----KAFTGFIVERDSPGLTPGRKELNMGQRAS 241
            ||.|:||:|||:|:.:.|.|:|   |...|:     :..|.|:|||...|:|.|..|..||.:||
Human   267 NGSKLWISNGGLADIFTVFAKT---PVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKAS 328

  Fly   242 DTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYALERKTFG 306
            :|..:.|:.||||.||||...|:|||:||...:..|..:||...|..:..:.:|:.:|..|..||
Human   329 NTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFG 393

  Fly   307 VPIAYHQAVQFMLADMA-IGVETSRLAWRLSAWEIDQGRRN-SYYASIAKCHAADMANKIASDAV 369
            ..|.....:|..||.|. :...|..:|:.:|| .:|||..: ...|:|:|...::.|.|:..:.:
Human   394 EKIHNFGLIQEKLARMVMLQYVTESMAYMVSA-NMDQGATDFQIEAAISKIFGSEAAWKVTDECI 457

  Fly   370 QIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIIS 408
            ||.||.||..|..||:::||.:|::|:|||:.|.||.::
Human   458 QIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
McadNP_648149.1 CaiA 35..411 CDD:224871 138/408 (34%)
MCAD 37..414 CDD:173846 136/399 (34%)
ACADVLNP_001257376.1 VLCAD 95..504 CDD:173850 139/409 (34%)
CaiA 125..496 CDD:224871 129/377 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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