DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcad and acdh-3

DIOPT Version :9

Sequence 1:NP_648149.1 Gene:Mcad / 38864 FlyBaseID:FBgn0035811 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001370606.1 Gene:acdh-3 / 172351 WormBaseID:WBGene00019433 Length:419 Species:Caenorhabditis elegans


Alignment Length:408 Identity:139/408 - (34%)
Similarity:217/408 - (53%) Gaps:10/408 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LNKLAAPALRQLVSQSRAYAAVSHV-SPNGTSFALTEDQLQLQELARKFTREEIIPVAAQYDKSG 67
            :::.|||.:..:.::.||:.. .|| ||   ...|:|::..:....|:|....|.|:..:.|...
 Worm    10 ISRSAAPVVATMSTKPRAHID-GHVPSP---LQQLSEEESSIVGTVRRFAVNVIKPLVREMDDKS 70

  Fly    68 EYPWPIIKKAWELGLMNNHIPADIGGLDLDVFTTCLSAEELAYGCTGIMTALEASGLGQTPVILS 132
            :....:|...:|.|||...||...||.....|...|..||||.....:...::.......|:|:.
 Worm    71 QMHQSVITGTFENGLMGIEIPEKYGGPGSSFFDAVLVIEELAKVDPSVSVFVDVQNTLVAPLIIQ 135

  Fly   133 -GNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANW 196
             |.:|||:|||.:::.| .:.::.::|.|:|||...:||.|:|.||::||:|.||||||.|.|.:
 Worm   136 LGTEEQKQKYLPKIVTE-AIGSFALSETGSGSDAFALKTTAKKDGDDFVISGSKMWITNAGHAQF 199

  Fly   197 YFVLARTNPDPKCPPSKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGITFEDVRVPKENVLIG 261
            :.|.|  |.| .....|..|.|:|:|:..|::.|:||..:|.|||.|..:.|::|||.|.::|..
 Worm   200 FLVFA--NAD-SAKGYKGITCFLVDRNQEGVSVGKKEDKLGIRASSTCSVHFDNVRVHKSSILGE 261

  Fly   262 EGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADMAIGV 326
            .|.|:|.|:...:..|..:.|..:||||.|.|:.:.|..:|:.||..:...|.:|..:....:.:
 Worm   262 YGKGYKYAIECLNAGRIGIGAQMLGLAQGCFDQTIPYLQQREQFGQRLIDFQGMQHQIGQTRMEI 326

  Fly   327 ETSRLAWRLSAWEIDQGRRNSYYASIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAK 391
            |.:||....:|.....|......|::||..|:.:|....|..|:..||.||..|:||||..||:|
 Worm   327 EAARLLVYNAARMKQNGLPFVREAAMAKLFASQVATTATSKCVEWLGGVGFTKEFPVEKFYRDSK 391

  Fly   392 IYQIYEGTSQIQRLIISR 409
            |..||||||.||...|::
 Worm   392 IGTIYEGTSNIQLNTIAK 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
McadNP_648149.1 CaiA 35..411 CDD:224871 130/376 (35%)
MCAD 37..414 CDD:173846 130/374 (35%)
acdh-3NP_001370606.1 SCAD_SBCAD 42..412 CDD:173847 129/372 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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