DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PGRP-SD and Pglyrp4

DIOPT Version :9

Sequence 1:NP_648145.1 Gene:PGRP-SD / 38858 FlyBaseID:FBgn0035806 Length:186 Species:Drosophila melanogaster
Sequence 2:NP_001159440.1 Gene:Pglyrp4 / 384997 MGIID:2686324 Length:375 Species:Mus musculus


Alignment Length:165 Identity:68/165 - (41%)
Similarity:96/165 - (58%) Gaps:10/165 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IVTRAEWNAKPPNGAIDS----METPLPRAVIAHTAGGACADDVTCSQHMQNLQNFQMSKQKFSD 82
            ||.|:.|      ||.||    |..|...|:|.||||..|:....|...:::||:|.|::....|
Mouse   215 IVPRSVW------GARDSHCSRMTLPAKYAIILHTAGRTCSQPDECRLLVRDLQSFFMNRLNACD 273

  Fly    83 IGYHYLIGGNGKVYEGRSPSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQAVKQ 147
            |||::|:|.:|.||||...:.:|:.....||.||.|.|:|.|....||..||:||::|:..||.:
Mouse   274 IGYNFLVGQDGGVYEGVGWNNQGSKTDSYNDISLSITFMGTFTGSPPNAAALEAAQDLIRCAVVK 338

  Fly   148 AQLVEGYKLLGHRQVSATKSPGEALYALIQQWPNW 182
            ..|...|.|:||..||.|.|||:|||.:|:.||::
Mouse   339 GYLTPNYLLMGHSDVSNTLSPGQALYNIIKTWPHF 373

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
PGRP-SDNP_648145.1 PGRP 20..162 CDD:128941 56/143 (39%)
Pglyrp4NP_001159440.1 PGRP 58..192 CDD:128941
PGRP 213..353 CDD:128941 56/143 (39%)
Interaction with murein. /evidence=ECO:0000250 295..304 1/8 (13%)