DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-SD and Pglyrp2

DIOPT Version :9

Sequence 1:NP_648145.1 Gene:PGRP-SD / 38858 FlyBaseID:FBgn0035806 Length:186 Species:Drosophila melanogaster
Sequence 2:XP_038935975.1 Gene:Pglyrp2 / 299567 RGDID:1359183 Length:522 Species:Rattus norvegicus


Alignment Length:162 Identity:54/162 - (33%)
Similarity:88/162 - (54%) Gaps:3/162 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RAEWNAKPPNGAIDSMETPLPRAVIAHTAGGA--CADDVTCSQHMQNLQNFQMSKQKFSDIGYHY 87
            |..|.|.|..|....:..||....:.||...|  |....:|:..|:::|.|..:.:.::||||.:
  Rat   357 RCRWGAAPYRGHPTPLRLPLGLLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQNVRGWADIGYSF 421

  Fly    88 LIGGNGKVYEGRSPSQRGAFAGPNNDGSLGIAFIGNFEERAPNKEALDAAKELLEQ-AVKQAQLV 151
            ::|.:|.||:||.....||.....|....|:||:||:....|::.||:..:::|.. |::...|.
  Rat   422 VVGSDGYVYQGRGWHWVGAHTLGYNSRGFGVAFVGNYTGSLPSEAALNTVRDVLPSCAIRAGLLR 486

  Fly   152 EGYKLLGHRQVSATKSPGEALYALIQQWPNWS 183
            ..|||.||||:..|..||.||:.|::.||:::
  Rat   487 PDYKLFGHRQLGKTDCPGNALFNLLRTWPHFT 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-SDNP_648145.1 PGRP 20..162 CDD:128941 45/139 (32%)
Pglyrp2XP_038935975.1 PGRP 352..497 CDD:128941 45/139 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345854
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 1 1.000 - - FOG0000842
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101717
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.750

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