DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34031 and gsc2

DIOPT Version :9

Sequence 1:NP_001246894.1 Gene:CG34031 / 3885665 FlyBaseID:FBgn0054031 Length:219 Species:Drosophila melanogaster
Sequence 2:XP_017946465.2 Gene:gsc2 / 101734976 XenbaseID:XB-GENE-22064768 Length:181 Species:Xenopus tropicalis


Alignment Length:181 Identity:46/181 - (25%)
Similarity:77/181 - (42%) Gaps:42/181 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KGKLGAFSIDSILSTSEAHSSQNSL--------------PKDNTNVTSSDISKLYAFSFTQEGNN 75
            |.|:..|||:||||......::.::              |||...|||.|  :::.   |.....
 Frog     9 KKKMSPFSIESILSLPSPEKTEMTIAMQHESELAQKGQSPKDLLVVTSQD--EIWV---TASSRI 68

  Fly    76 KTPLTNFDLCQGHPRRLPITFDGSTVSRFVWRTESILPSYITNSTNLQEKQLRKRFTDRKPRQAY 140
            ..||.......|..        |:.|        ::.|..:.:..:.|.:       .|:.|..:
 Frog    69 HWPLHMVHANHGDA--------GAAV--------TVEPPTLLSLPHTQRR-------TRRHRTIF 110

  Fly   141 SASQLERLENEFNLDKYLSVSKRVELSKSLSLTEVQVKTWFQNRRTKWKKQ 191
            :..||:.||..|:.::|..|..|.:|:..:.|.|.:|:.||:|||.||::|
 Frog   111 TEDQLQALEQTFHHNQYPDVIAREQLAGRIQLKEERVEVWFKNRRAKWRRQ 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34031NP_001246894.1 Homeobox 136..189 CDD:278475 19/52 (37%)
gsc2XP_017946465.2 Homeobox 109..160 CDD:395001 19/50 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.