DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34031 and hoxd3

DIOPT Version :10

Sequence 1:NP_001246894.1 Gene:CG34031 / 3885665 FlyBaseID:FBgn0054031 Length:219 Species:Drosophila melanogaster
Sequence 2:XP_002935734.1 Gene:hoxd3 / 100038058 XenbaseID:XB-GENE-478462 Length:415 Species:Xenopus tropicalis


Alignment Length:226 Identity:61/226 - (26%)
Similarity:99/226 - (43%) Gaps:56/226 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 IEKSIQTKKKGKLGAFSIDSILSTSEAHSS----QNSLPKD--------------NTNVTSSDIS 62
            ::|:...:..|..|.::.....|.|...|.    |:||..|              ..|..::|||
 Frog    17 MQKTAYYENSGLFGGYTYAKPESYSYGPSQQQYPQSSLDSDYPSTACSIQPAAIRAPNHKANDIS 81

  Fly    63 KLYAFSFTQEGNNKTP-LTNFDLCQGH-----PRRLPITFDGS----------------TVSR-- 103
            .....:.:.:.:|:.| ::|    |.|     |...|...:.|                |:|:  
 Frog    82 GSCMRTTSSQNSNQAPSISN----QQHQAPSLPPSSPSHGNSSAQKKSKSSNSSGSSQATLSKQI 142

  Fly   104 FVWRTESILPSYITNST---------NLQEKQLRKRFTDRKPRQAYSASQLERLENEFNLDKYLS 159
            |.|..||...:...|::         |.:||..... :.::.|.||:::||..||.||:.::||.
 Frog   143 FPWMKESRQNAKQKNTSSSSSTPPGENCEEKSPTGP-SSKRVRTAYTSAQLVELEKEFHFNRYLC 206

  Fly   160 VSKRVELSKSLSLTEVQVKTWFQNRRTKWKK 190
            ..:|||::..|:|||.|:|.||||||.|:||
 Frog   207 RPRRVEMANLLNLTERQIKIWFQNRRMKYKK 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34031NP_001246894.1 Homeodomain 134..190 CDD:459649 27/55 (49%)
hoxd3XP_002935734.1 Homeodomain 181..237 CDD:459649 27/55 (49%)
DUF4074 352..413 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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