DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mitf and tfe3b

DIOPT Version :9

Sequence 1:NP_001245436.1 Gene:Mitf / 3885647 FlyBaseID:FBgn0263112 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001038531.1 Gene:tfe3b / 564996 ZFINID:ZDB-GENE-010919-3 Length:451 Species:Danio rerio


Alignment Length:615 Identity:167/615 - (27%)
Similarity:227/615 - (36%) Gaps:253/615 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 TSRTQLKLQLQREQ---QQQMMIQQQTLDTAMDPKMHLLFGSGQGLMESEFIDSGSTSACGSGSS 238
            :||..|:.||.|||   |::...|||.....:.|                   :.:|.|.   |.
Zfish     2 SSRVLLRQQLMREQAQEQERREAQQQASVAQLRP-------------------ADTTPAI---SV 44

  Fly   239 SLEQMSQLVQMDNLIDSSSGAKLKVPLQSIGVDVPPQVLQVSTVLENPTRYHVIQKQKNQVRQYL 303
            ||..|               |....|.|     ||.:||:|.|.|||||:||:.|.|:.||::||
Zfish    45 SLPPM---------------AARPPPAQ-----VPVEVLKVQTHLENPTKYHIQQAQRQQVKEYL 89

  Fly   304 SESFKPSMWGSHTSEIKLANNSASTGNLQNSSLQKGICDPLERTNRFGCDSAVSAKRIMPSDDAM 368
            |.:.               .|..:|..|                                     
Zfish    90 STTL---------------GNKVATQTL------------------------------------- 102

  Fly   369 PISPFGGSFVRCDDINPIEPTVLRPNSHGAGEPENAHRTAQLGLSKANSSLSSTRSSSGIVNSIR 433
                         .::|:        .|.|..||       :|.|                    
Zfish   103 -------------GVSPV--------PHSASAPE-------MGPS-------------------- 119

  Fly   434 ISSTSSSLQSTSAPISPSVS-SVATSVSEPDDIFDDILQ-NDSFNFD--KNFNSELSIKQE-PQN 493
                     ::|||.||... ::.::..|.||:.|||:. ..|||.|  ...:|.|.:... |.|
Zfish   120 ---------ASSAPNSPMAHLNLGSNKEEMDDVIDDIISLESSFNDDILSLIDSGLQLPNTLPGN 175

  Fly   494 LTD-------------------------------------AEMNALAKDRQKKDNHNMIERRRRF 521
            |.|                                     .|..|..|:||||||||:|||||||
Zfish   176 LLDVYNSPGMTTPTITVSNSCPADLPNIKREYTGNVIVIETEARAFMKERQKKDNHNLIERRRRF 240

  Fly   522 NINDRIKELGTLLPKGSDAFYEVVRDIRPNKGTILKSSVDYIKCLKHEVTRLRQNELRQRQVELQ 586
            ||||||||||.|:||.:|.      ::|.|||||||:|||||:.|:.|..|.::.|:||:::|..
Zfish   241 NINDRIKELGALIPKSTDP------EMRWNKGTILKASVDYIRKLQKEQQRAKEIEMRQKKLEQS 299

  Fly   587 NRKLMSRIKELEMQAKSHGILLSENHLTSLSAPTQPYLKSFSLSPTASRSRRSLFDQPVEKKIQV 651
            |:.|:.||:|||:||:.||          |:|...|     .|:..||..:..|.......:..|
Zfish   300 NQALILRIQELEIQARHHG----------LNATVSP-----GLNTEASFIQNQLLQPNASMQAGV 349

  Fly   652 IDG-------ADGNMGMNQVDEFMEDCKYAVQGGDPMLSSHSHMQSAPQSPSSKTLN-SG--SFE 706
            .||       .||.|.......|:                     |.|.|.|...:. ||  ..|
Zfish   350 GDGQPQSHLNMDGAMAQTSPSPFL---------------------SVPPSGSPAAVAVSGPLHLE 393

  Fly   707 PKNFSEADE---SLFR--GKSSLASDDCCG 731
            ..:|:|.||   .|:.  |.|.:..||..|
Zfish   394 TFSFTELDEHASDLYPDVGLSDILMDDVRG 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MitfNP_001245436.1 MITF_TFEB_C_3_N <272..>311 CDD:292573 20/38 (53%)
HLH 505..570 CDD:238036 43/64 (67%)
tfe3bNP_001038531.1 MITF_TFEB_C_3_N 4..144 CDD:292573 59/290 (20%)
HLH 224..284 CDD:238036 44/65 (68%)
DUF3371 312..450 CDD:288684 35/148 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593391
Domainoid 1 1.000 85 1.000 Domainoid score I8110
eggNOG 1 0.900 - - E1_KOG1318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 150 1.000 Inparanoid score I4340
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1211990at2759
OrthoFinder 1 1.000 - - FOG0000691
OrthoInspector 1 1.000 - - otm24979
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45776
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X566
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.860

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