DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mitf and Tfec

DIOPT Version :10

Sequence 1:NP_001245436.1 Gene:Mitf / 3885647 FlyBaseID:FBgn0263112 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_071774.1 Gene:Tfec / 26296 RGDID:3846 Length:317 Species:Rattus norvegicus


Alignment Length:378 Identity:128/378 - (33%)
Similarity:175/378 - (46%) Gaps:109/378 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   359 KRIMP-SDDAMPISPFGGSFVRCDDINPIEPTVLRPNSHGAGEPENAHRTAQLGLSKANSSLSST 422
            ||..| :...||::..|          |..|.   .::..||.|    .|..|.|.|        
  Rat    13 KRAQPLAASCMPLAEHG----------PRSPD---SDAGCAGNP----FTNPLALGK-------- 52

  Fly   423 RSSSGIVNSIRISSTSSSLQSTSAPISPSVSSVATSVSEPDDIFDDILQNDSFNFDKNFNSELSI 487
              ..|:| ..|:|.:...:.|....||| |::...:.|.|                    |.|.:
  Rat    53 --EDGVV-EWRLSGSILDVYSGEQGISP-VNTGLMNASCP--------------------SILPM 93

  Fly   488 KQEPQNLTDAEMNALAKDRQKKDNHNMIERRRRFNINDRIKELGTLLPKGSDAFYEVVRDIRPNK 552
            |:|   :.:.:..||||:||||||||:||||||:|||.||||||||:||.:|.      |||.||
  Rat    94 KKE---IAETDTRALAKERQKKDNHNLIERRRRYNINYRIKELGTLIPKSNDP------DIRWNK 149

  Fly   553 GTILKSSVDYIKCLKHEVTRLRQNELRQRQVELQNRKLMSRIKELEMQAKSHG--ILLS------ 609
            |||||:||||||.|:.|..|.|:.|.||:::|..||:||.||:|||:||::||  ||.|      
  Rat   150 GTILKASVDYIKWLQKEQQRARELEHRQKKLEHANRQLMLRIQELEIQARAHGLPILASLGTADF 214

  Fly   610 ENHLTSLSAPTQPYLKSFS------LSPTASRS-----RRSLFDQPVE-----------KKIQVI 652
            ..|:|.    .|.:.:..|      |:|:...|     :...|..|:.           |:.|.:
  Rat   215 GTHITK----QQTHSEKNSVGCCQQLTPSQGTSPEFYEQAVAFSDPLSHFTDLSFSAALKEEQRL 275

  Fly   653 DGADGNMGMNQVDEFMED--CKYAVQGGDPMLSSHSHMQSAPQSPSSKTLNSG 703
            ||.           .:.|  |.:   |.||:||:.|...|...|.||.:...|
  Rat   276 DGM-----------LLSDTICPF---GTDPLLSAISPAVSKASSRSSLSSEDG 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MitfNP_001245436.1 MITF_TFEB_C_3_N <272..>311 CDD:464952
bHLHzip_MITF_like 504..577 CDD:381403 49/72 (68%)
TfecNP_071774.1 Necessary for transcriptional transactivation. /evidence=ECO:0000250 1..90 26/125 (21%)
bHLHzip_MITF 99..202 CDD:381496 67/108 (62%)
DUF3371 196..300 CDD:463372 28/121 (23%)
Necessary for transcriptional transactivation. /evidence=ECO:0000250 242..317 20/87 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.