DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mitf and Mitf

DIOPT Version :9

Sequence 1:NP_001245436.1 Gene:Mitf / 3885647 FlyBaseID:FBgn0263112 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_001178018.1 Gene:Mitf / 25094 RGDID:3092 Length:526 Species:Rattus norvegicus


Alignment Length:624 Identity:178/624 - (28%)
Similarity:249/624 - (39%) Gaps:225/624 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 TAEPRIVGLPPLSGGPTFKTATPTSRTQLKLQLQRE--QQQQMMIQQQTLDTAMDPKMHLLFGSG 216
            :||......||||      ::|.|||..|:.||.||  |:|:...|||.|               
  Rat    37 SAEHSGASKPPLS------SSTMTSRILLRQQLMREQMQEQERREQQQKL--------------- 80

  Fly   217 QGLMESEFIDSGSTSACGSGSSSLEQMSQLVQMDNLIDSSSGAKLKVP--LQSIGVDVPPQVLQV 279
                                     |.:|.:|....:..:....:.||  |.| ...||.:||:|
  Rat    81 -------------------------QAAQFMQQRVAVSQTPAINVSVPTTLPS-ATQVPMEVLKV 119

  Fly   280 STVLENPTRYHVIQKQKNQVRQYLSESFKPSMWGSHTSEIKLANNSASTGNLQNSSLQKGICDPL 344
            .|.|||||:||:.|.|::||:||||.:              |||..|..           :..| 
  Rat   120 QTHLENPTKYHIQQAQRHQVKQYLSTT--------------LANKHAGQ-----------VLSP- 158

  Fly   345 ERTNRFGCDSAVSAKRIMPSDDAMPISPFGGSFVRCDDINPIEPTVLRPNSHGAGEPENAHRTAQ 409
                  .|.:       .|.|.|||..|                                     
  Rat   159 ------PCPN-------QPGDHAMPPVP------------------------------------- 173

  Fly   410 LGLSKANSSLSSTRSSSGIVNSIRISSTSSSLQSTSAPISPSVSSVA-TSVSEPDDIFDDILQND 473
             |.|..||.::....:|   |..:.:......||.:....|.:::.: .|..:.||:.|||:   
  Rat   174 -GSSAPNSPMAMLTLNS---NCEKEAFYKFEEQSRAESECPGMNTHSRASCMQMDDVIDDII--- 231

  Fly   474 SFNFDKNFNSE----------------------------------LSIKQE-PQNL--------- 494
              :.:.::|.|                                  |:|... |.||         
  Rat   232 --SLESSYNEEILGLMDPALQMANTLPVSGNLIDLYSNQGLPPPGLTISNSCPANLPNIKRELTA 294

  Fly   495 ----TDAEMNALAKDRQKKDNHNMIERRRRFNINDRIKELGTLLPKGSDAFYEVVRDIRPNKGTI 555
                |::|..||||:||||||||:|||||||||||||||||||:||.:|.      |:|.|||||
  Rat   295 CIFPTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDP------DMRWNKGTI 353

  Fly   556 LKSSVDYIKCLKHEVTRLRQNELRQRQVELQNRKLMSRIKELEMQAKSHGILLSENHLTSLSAP- 619
            ||:|||||:.|:.|..|.:..|.||:::|..||.|:.|::||||||::||:.|..:  |.|.:| 
  Rat   354 LKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAHGLSLIPS--TGLCSPD 416

  Fly   620 -------TQPYLKSFSLSPTASRSRRSLFDQPVEKKIQVIDGA---DGNMG-------------- 660
                   .:|.|::.|......::     |......:.:.||.   ..|:|              
  Rat   417 LVNRIIKQEPVLENCSQELVQHQA-----DLTCTTTLDLTDGTISFTNNLGTMPESSPAYSIPRK 476

  Fly   661 --MNQVDEFMEDCKYAVQGGDPMLSSHSHMQSAPQSPSS 697
              .|..|..|:|....|...||:|||.|...|...|..|
  Rat   477 MASNLEDILMDDALSPVGVTDPLLSSVSPGASKTSSRRS 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MitfNP_001245436.1 MITF_TFEB_C_3_N <272..>311 CDD:292573 21/38 (55%)
HLH 505..570 CDD:238036 45/64 (70%)
MitfNP_001178018.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..54 6/16 (38%)
MITF_TFEB_C_3_N 56..194 CDD:406384 43/141 (30%)
bHLHzip_MITF 300..403 CDD:381496 37/151 (25%)
Leucine-zipper. /evidence=ECO:0000305 374..395 14/33 (42%)
DUF3371 397..522 CDD:403149 62/132 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..526 6/37 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351576
Domainoid 1 1.000 85 1.000 Domainoid score I7983
eggNOG 1 0.900 - - E1_KOG1318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 191 1.000 Inparanoid score I3781
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1211990at2759
OrthoFinder 1 1.000 - - FOG0000691
OrthoInspector 1 1.000 - - otm45098
orthoMCL 1 0.900 - - OOG6_109347
Panther 1 1.100 - - LDO PTHR45776
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X566
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.760

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