DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34057 and C1galt1c1

DIOPT Version :9

Sequence 1:NP_001033980.2 Gene:CG34057 / 3885645 FlyBaseID:FBgn0054057 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001025204.1 Gene:C1galt1c1 / 302499 RGDID:1311230 Length:316 Species:Rattus norvegicus


Alignment Length:309 Identity:86/309 - (27%)
Similarity:148/309 - (47%) Gaps:38/309 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GIMLG---IRLTDFIGYLKL------WRNNDLRASEKAALLKYPVASEEHLATWLRREVRILCLV 86
            |:|||   ..|...:|::::      ..::.|:|..|..:||  ::..|.:.  |.:..::.|:|
  Rat    11 GVMLGSIFCALITMLGHIRIGNRMHHHEHHHLQAPNKDDILK--ISETERME--LSKSFQVYCIV 71

  Fly    87 LTMPSSHATKAALVNRTWGARCNKLIFMSSQTDSNLNILQ-INKSESRKNLYAKVRTGMAYVHKH 150
            |..|...:..|| |..||...|:|..|.||:   |:.:.: ||...:  :::..:|....|.:..
  Rat    72 LVKPKDVSLWAA-VKETWTKHCDKAEFFSSE---NVKVFESINMDTN--DMWLMMRKAYKYAYDK 130

  Fly   151 YLNEYDWFLKADDDTYIVMENLRLFLYPYDPESSVYFGCRFKAYFSQGYMSGGGGYVLSRDALRR 215
            |.::|:||..|...|:.|:|||:.||...||....|.|...|:...: |:|..||.|||.::::|
  Rat   131 YKDQYNWFFLARPTTFAVIENLKYFLLRKDPSQPFYLGHTVKSGDLE-YVSVDGGIVLSIESMKR 194

  Fly   216 LNLFALNSTTICKLNGE-----SEDVQIGHCLQDVGVIAGDTRDFQGHHRFLPVNPFTVFPTILS 275
            || ..|:....|...|.     |||.|:..||:..||.|.:..|..|.         .||.|...
  Rat   195 LN-GLLSVPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDADGK---------DVFNTKSV 249

  Fly   276 NSWLEGYFFHKPNK--SDCCAASAISFHYVKDFEFELFEFFLYYMRVFG 322
            ..:::....::||:  ..||:..|::|:.:...:..:..:.:|.:|.||
  Rat   250 GLFIKEAMTNQPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFG 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34057NP_001033980.2 Galactosyl_T 93..>243 CDD:304462 50/155 (32%)
C1galt1c1NP_001025204.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347492
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2246
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1407357at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23033
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.850

Return to query results.
Submit another query.